PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG244300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 243aa    MW: 25095.3 Da    PI: 10.7282
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG244300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.48.8e-192466345
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         i++   r vtfskR+ g +KKA+ELS LC+a va +ifss g+
  Pavir.3KG244300.1.p 24 IKDRASRLVTFSKRKSGFFKKASELSLLCGAHVAAVIFSSAGR 66
                         899999**********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-241473IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.0491474IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-221682IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-161636IPR002100Transcription factor, MADS-box
PfamPF003192.4E-212470IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-163651IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-165172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVAPPRGTGR KSQGRRKRTE MALIKDRASR LVTFSKRKSG FFKKASELSL LCGAHVAAVI  60
FSSAGRPFAF GTPSVDHVLR LCAPLPAGDE DGLGSGLFPD DATDGGERGA VEGGGRGARG  120
RRGDADGRRR REGAPGRRES VVLVGGGRGG ARGGGAAGVR QGAPPAQGQC ATPRREAAAG  180
PCLAADDAAA VEPPQDAFLT DVHCSSSLGF SAIGLDGIEL LPRFQIINHF KNFGDSKFLK  240
FD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG244300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-19AGAMOUS-like 29