PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG583700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 254aa    MW: 27087.4 Da    PI: 9.0787
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG583700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.21.9e-151979257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Pavir.2KG583700.1.p 19 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 79
                         89*****************99*************************************997 PP
2Wus_type_Homeobox107.48.5e-351881265
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
  Pavir.2KG583700.1.p 18 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 81
                         589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.241580IPR001356Homeobox domain
SuperFamilySSF466891.71E-131686IPR009057Homeodomain-like
SMARTSM003893.9E-61784IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-81985IPR009057Homeodomain-like
PfamPF000463.5E-131979IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEDGRLMSPE RQAAAEPVRS RWTPKPEQIL ILESIFNSGM VNPPKDETVR IRKLLERFGA  60
VGDANVFYWF QNRRSRSRRR QRQLQLQAQA QAQAQAAGSS SSSGSPPPTS AAGLAPASSF  120
AHGAAYGSSS ASASWQGMMG DLDCGGGDDL FAISRQMGYA DGGGSGSARA GSSSLRQQQL  180
YYSCQSAGSL TTMSVFINGV ATEVPRGPID LRSMFGQDVM LVHSTSGILP VNEYGILMQS  240
LQMGESYFLV TRG*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In crown roots, mainly expressed after crown roots emergence but barely in crown root initials. {ECO:0000269|PubMed:26307379}.
UniprotTISSUE SPECIFICITY: Present in crown roots. {ECO:0000269|PubMed:26307379}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}.
UniProtTranscription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG583700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3706091e-108AK370609.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2113D12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802778.11e-103WUSCHEL-related homeobox 11-like
SwissprotB8B6443e-90WOX11_ORYSI; WUSCHEL-related homeobox 11
SwissprotQ0D3I73e-90WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBLA0A2S3H5561e-102A0A2S3H556_9POAL; Uncharacterized protein
TrEMBLA0A2T7F0821e-102A0A2T7F082_9POAL; Uncharacterized protein
STRINGOGLUM07G26700.12e-95(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.25e-35WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
    Plant Cell, 2015. 27(9): p. 2469-83
    [PMID:26307379]
  3. Zhang T, et al.
    The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.
    Front Plant Sci, 2018. 9: p. 523
    [PMID:29740464]