PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG423800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 271aa    MW: 27411.2 Da    PI: 5.7846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG423800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.4e-1685133356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g+
  Pavir.1NG423800.1.p  85 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRGA 133
                          9***9.55.6*********94....36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.17884140IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1884141IPR016177DNA-binding domain
SMARTSM003802.1E-2684146IPR001471AP2/ERF domain
CDDcd000189.38E-1885142No hitNo description
PfamPF008474.7E-985132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2685140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAEQQPPAAS STSPPTHHSP SPVVQVQAGR QASGSSPASP HSPSPVVQGD GAAAAGVVVA  60
AAPGMATATS SGEPSPRSSG KHAFYRGIRC RSGKWVSEIR EPRKARRIWL GTYPTAEMAA  120
AAYDVAARAL RGADAVLNFP AAIASRQAPA SASPADIRAA AAAAAAAAQL EHPPQGGEAA  180
ATADPPAAAR DQHHGMGSAA ADAAGYAQHQ PGVGGSDEFM DEEAIFEMPQ LLRNMAAGMM  240
MSPPRLSPDT SDESPDPSEA GESLWSYHDP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1378145168ATERF1
3gcc_A2e-1378145168ATERF1
5wx9_A3e-13811401172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.42871e-149leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG423800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693721e-133AC169372.2 Sorghum bicolor clone SB_BBc0156J18, complete sequence.
GenBankKJ7277031e-133KJ727703.1 Zea mays clone pUT5642 AP2-EREBP transcription factor (EREB127) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826401.11e-120ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ905e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3L6QE051e-129A0A3L6QE05_PANMI; Uncharacterized protein
STRINGPavir.Ab02683.1.p1e-109(Panicum virgatum)
STRINGSi018039m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-27ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]