PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG002300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 718aa    MW: 76309.3 Da    PI: 6.0851
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG002300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.31.6e-31531615186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k+ev aLi++r+ +e r+++  lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  Pavir.1NG002300.1.p 531 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSARMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 615
                          8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.317524588IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.0E-4527587IPR009057Homeodomain-like
SMARTSM007170.0065528590IPR001005SANT/Myb domain
CDDcd122038.70E-30530595No hitNo description
PfamPF138377.7E-23530617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDGGF AMSAPPPPQQ QPQPAAAQQE LGGPFRYQPL HHHALPPQHY  60
HHAPHMPPHF AHFAVPPQAP FTQQLLHQAA AAGHHLQLFH EQQHHHHKPP PPQQQSAPAR  120
WAPQHHQQQP HQQQQHHHHQ PHHHPHHLGF DVEAVPESSG AGAGSAASGG AAPPGVPPFL  180
AAAMNFKLAV DAGGGSGATG GTDDALNDGG GGAGSAMMLH VGGGGDDEAA PESRLRRWNG  240
DEETSIKEPT WRPLDIDYLH STSSSKRTPG KEKVATPESP APTAAAANYF KKGDDNAAAA  300
AAGGSNYKLF SELELIYKPG SSGAQTGSGS GLTGDDNAIL DPAMADLPGV AAPDAPQLNT  360
SDTSAGEDAA AVVQPPQPQP PADPARRKRK RRRQEQLSAS ASFFERLVQR LMEHQESLHR  420
QFLDAMERRE RERAARDEAW RRQEADKFAR EASARAQDRA SAAAREAAII AYLEKISGES  480
IVLPPPAAAS GDDTSQDAGK ELVPYDGGGG GGDAAPGSGG DMGSLHLSTS RWPKHEVEAL  540
IRVRTGLEGR FQEPGLKGPL WEEVSARMAA AGYGRSAKRC KEKWENINKY FRKAKESGKK  600
RPAHAKTCPY FDELDRLYSR SAGQSSNAGA GDEAKASSEL LDAVVRYPDA HGGPPGFMLE  660
REHQNEASGG GGNGGREEGA ADEEEDGGGI AKGRAGDDQD QDDEVESHGG RDDDDDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385390RRKRKR
2386391RKRKRR
3386392RKRKRRR
4387392KRKRRR
5388392RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.416243e-70leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG002300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819158.10.0trihelix transcription factor GT-2-like
TrEMBLA0A3L6RV100.0A0A3L6RV10_PANMI; Trihelix transcription factor GTL1-like
STRINGPavir.Aa03569.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-38Trihelix family protein