PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG005500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 716aa    MW: 75827.9 Da    PI: 6.1523
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG005500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.31.6e-31529613186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k+ev aLi++r+ +e r+++  lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  Pavir.1KG005500.1.p 529 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSARMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 613
                          8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0048526588IPR001005SANT/Myb domain
PROSITE profilePS500907.201528586IPR017877Myb-like domain
PfamPF138376.2E-23528615No hitNo description
CDDcd122031.41E-29529593No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDGGF AMSAPPPPQQ QPPTQPAAAQ QELGGPFRYQ PLHHHALPPH  60
HHHHAPPHMP PHFAHFGAPP QAPFTQQLLH QAAAAGHHLQ LFHEQQQHHH HKPPPPPQQQ  120
SAPARWAPQP HQHHQQAHHH HHHPHHLGFD VEAVPESSGA GAGSAASGGA TPPGVPPFLA  180
AAMNFKLAVD AGGGSGATGG TDDALNDGGG GAGSGMMLHV GGGDEEAAPE SRLRRWNGDE  240
ETSIKEPTWR PLDIDYLHST SSSKRTPGKE KVATPESPAP TAAAANYLKK GDDNAAVAAA  300
AAAATGGSNY KLFSELEAIY KPGSSGAQTG SGSGLTGDDN AILDPAMAAD LPGVAAPDAP  360
QVNTSETSAG EEAAAVVQPP APAPADAARR KRKRRRQEQL SASASFFERL VQRLMEHQES  420
LHRQFLDAME RRERERAARE EAWRRQEADK LAREASARAQ DRASAAAREA AIIAYLEKIS  480
GESIALPPPA AASGDDTSQQ DAAAGKELVP YDGGGGVGSS SPHLMSSSRW PKHEVEALIR  540
VRTGLEGRFQ EPGLKGPLWE EVSARMAAAG YGRSAKRCKE KWENINKYFR KAKESGKKRP  600
AHAKTCPYFD ELDRLYSRNN ASNAGGGAGD EAKASSELLD AVVRYPDAHG GPPGFMLDSG  660
EHQNEASGGR EVGAAGEEED GGIAKGRAAD DQDQDQDQDQ DDEVESHGGH DDDDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388393RRKRKR
2389394RKRKRR
3389395RKRKRRR
4390395KRKRRR
5391395RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.416241e-126leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG005500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0883330.0BT088333.2 Zea mays full-length cDNA clone ZM_BFc0144A13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951198.10.0trihelix transcription factor GTL1-like
TrEMBLA0A3L6RV100.0A0A3L6RV10_PANMI; Trihelix transcription factor GTL1-like
STRINGSb04g000520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-39Trihelix family protein