PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G049500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 317aa    MW: 36739.8 Da    PI: 9.8898
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G049500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.11.6e-30115199186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+k+ev aLi++r+++e ++++   k+plWeevs+ m++ g++rs+k+Ckekwen+nk+++k ke+ ++r s++s+tc+yf+ql+
  Potri.018G049500.1 115 RWPKDEVEALIKVRSRIEIKFQEPGVKGPLWEEVSSLMSSMGYQRSAKRCKEKWENINKYFRKAKESPERR-SQRSKTCSYFNQLD 199
                         8********************************************************************98.88999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.503108172IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.9E-4113171IPR009057Homeodomain-like
CDDcd122031.00E-22114179No hitNo description
PfamPF138376.2E-21114201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAGFFENTVK KVMDHQEMLH RKFLEVIERM DRERTDREET WRHQEAEKHN REAISRAHER  60
ASTSSREAQI VTYKERITGQ SINLPIRMAP PLLQPEISNE PIKEITSTKS DSHSRWPKDE  120
VEALIKVRSR IEIKFQEPGV KGPLWEEVSS LMSSMGYQRS AKRCKEKWEN INKYFRKAKE  180
SPERRSQRSK TCSYFNQLDQ LYSRSLINYP SSTTYMPSRG IEFDIEKQGQ PEVLEAFAVG  240
KDHLATITNP PGENIKGAEM GSSRFEFDGI ADKNEELEEG SSSRIKKFTK MISKRMANKE  300
KMTVVVTKKM KIEARA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G049500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446116.10.0trihelix transcription factor GTL1
TrEMBLA0A2K1WW030.0A0A2K1WW03_POPTR; Uncharacterized protein
STRINGPOPTR_0310s00200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Representative plantOGRP6631573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.26e-45Trihelix family protein