PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G030000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 572aa    MW: 62582.8 Da    PI: 6.9108
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G030000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.2e-15435473341
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         +k+CnCkk++Clk+YC+Cfaag +C+e+C C++C+N+ e
  Potri.018G030000.1 435 CKRCNCKKTRCLKRYCDCFAAGIYCAETCACQGCFNRPE 473
                         79**********************************876 PP
2TCR48.81.4e-15521559139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k gCnCk+s C+kkYCeC++a++ Cs+ C+Ce+CkN 
  Potri.018G030000.1 521 RHKTGCNCKRSMCVKKYCECYQANVGCSNACRCEGCKNI 559
                         5899**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.7E-15433474IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.202434561IPR005172CRC domain
PfamPF036384.0E-11436471IPR005172CRC domain
SMARTSM011142.8E-15521562IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.6E-11524558IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MDSPKTTTTT TATTTISATT TVSLSDSPPV QESPFSNYVS RLSPIKPVKA SHVAQGLLGI  60
NSPPLVFTSP RTLSDRQTNF LRRFPCPQIS GAEISKNDGG SKKSADGPKD LRKSSTYLNS  120
RLIINVQKSN NINNFEQDQL GSFSGCVDEY LFDPVDVDCA DSVNLTKGDA SQAMPEQDGE  180
DPKEHSTSET IKEKIEEEGN IVEQPSHVCP NFMSDLLVDH TSRQQQCDTS GAQAAPPLED  240
YGEDGGTVLH GPVQLITHHG SEVSQLHRGM SRRCLQFEKA QQKTPMDGTY SLDLAITIIG  300
SISSSSNTEL EILDSSQVEL PSSSRKKQTV FVSMPSAGHK ISCSKLPSLV ERVSSTAGDD  360
VLQTKASLAT GSAISESLHT KETLNKLQPP EHQITLHNNK RFSSEHADNF EEFNQSSPKK  420
KRQDHKVSST DGDGCKRCNC KKTRCLKRYC DCFAAGIYCA ETCACQGCFN RPEYEDTVLE  480
ARQQKESHNP LAFAPKIVQH VTEFHAINVE DASLFTPSSG RHKTGCNCKR SMCVKKYCEC  540
YQANVGCSNA CRCEGCKNIH GRKEGEKLHR N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1643655912121Protein lin-54 homolog
5fd3_B2e-1643655912121Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G030000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446106.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2K1WV380.0A0A2K1WV38_POPTR; Uncharacterized protein
STRINGPOPTR_0006s26740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-64Tesmin/TSO1-like CXC domain-containing protein