PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G136500.1
Common NamePOPTR_0016s14350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 918aa    MW: 99765.3 Da    PI: 6.826
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G136500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18327427199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Potri.016G136500.1 327 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLQAGDTVTFSRMD- 415
                         99**************************555567778***************9989999999***9.********************876. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          e++lv++++++
  Potri.016G136500.1 416 PEGKLVMGFRKA 427
                         777788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-30321435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20324427IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-23325426No hitNo description
SMARTSM010192.4E-21327428IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18327428IPR003340B3 DNA binding domain
PfamPF023624.3E-16327427IPR003340B3 DNA binding domain
PROSITE profilePS5105013.687592642IPR011124Zinc finger, CW-type
PfamPF074961.9E-10597639IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MASSSIKSCM NATCGVSTSS SGGWRKGWAL RSGDFAILCD NCGSAYEQSV FCEVFHSKDS  60
GWRECTSCGK RLHCGCIASK SLLELLDGGG VNCTSCSKSA GVSSVNGDEK TNGFGMSKVD  120
DAGELQSASA DNQLTTETKL MQLGNCIDRI ATRNLLQLQS SETDGSYRKM KQEDIIPPVG  180
EIASTSFLNF NHISNASSQT AKPEIHKTTA AKDLYESLAQ TNLSISLGSS LGNPNPFPGG  240
VVDERVLAKA SSPLQQGPRS RHLLPKPPKP ALVLDANAGM VSQIRVARPP AEGRGRNQLL  300
PRYWPRITDQ ELQQISGDPN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE  360
GLPLRIQDVK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MKLQAGDTVT FSRMDPEGKL  420
VMGFRKASNS IAMQDTQPSA IPNGVPSSES YFSGVFENLP IISGYSGLLH SLKGSTDTHL  480
SALSKHLHSA SGDISWHKSE KQEARTRDGL LLPSLLAPER KRLRNIGSKS KRLLIDSLDA  540
LELKVTWEEA QDLLRPEPSI KPSIVTIEDH DFEEYEEPPV FGKTSIFVVR SIGGQEQWAQ  600
CDSCSKWRRL PIDVLLPPKW TCVDNAWDQS RCSCSAPDEL APRELENLLR LTKDFKKRRI  660
TSSHRPAQEH ESSGLDALAN AAILGDAGEQ STTAVAATTK HPRHRPGCSC IVCIQPPSGK  720
GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR IQHMSGPKDE ADVESSSKLA  780
STPMDPSDNE ARSGNELESK SQTNNLSNKL ADSGKGHLDL NCHPGREEDS QAGLARMSMT  840
SLLQVASLPL ETYLKQNGLA SLSEQQASSA SHVPPQAGEN GGRIDEDCQP ASVAQEQESG  900
GEEDDEPGPD QSQTDLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-693054342131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1735746KRRFKTLMMRKK
2735748KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G136500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1291951e-155GU129195.1 Populus balsamifera MORC family ATPase (VP) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323669.20.0B3 domain-containing transcription repressor VAL2
RefseqXP_024443965.10.0B3 domain-containing transcription repressor VAL2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2K1XFA30.0A0A2K1XFA3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s14350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]