PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G043600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 899aa    MW: 98321.7 Da    PI: 7.621
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G043600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-18350449198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ + 
  Potri.011G043600.1 350 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLRVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE- 438
                         89**************************555567778***************9989999999***9.********************766. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++lv+++++
  Potri.011G043600.1 439 PEGKLVMGFRK 449
                         77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-30347453IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-19348449IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-21348449No hitNo description
SMARTSM010197.3E-19350451IPR003340B3 DNA binding domain
PfamPF023629.3E-16350449IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293350451IPR003340B3 DNA binding domain
PROSITE profilePS5105014.223576626IPR011124Zinc finger, CW-type
PfamPF074961.2E-12581623IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MSSSSSSLAA TSTTATATNN NNNNTSCCSS SSTVLSRKCF NSDCTDFKSR KGWRLRSGDF  60
ADLCDRCASA HEEGRFCETF HSNASGWRSC ESCGKRVHCG CIVSLQAFTL LDAGGIACMA  120
CARKSFVLTP NPAWPLFYHS PFPERLKDLS VKSWSQLAGS GPVPWRQAPS LFNSSATQSE  180
LQPRMPYEVD RLNAGERFSA LSLEKRKLED FPERFINGSP RNHLQDIVEN GNAGIIDDEQ  240
PQMLSSLRED ISAQQFGITI PYASPSKLKG QIEGSVNPLL PAPLPLFAKR VHGTLHKGVD  300
SSVDGQIRNG RPRIDARGKS QLLPRYWPRF TDEELQQISG NPNSVIKPLF EKMLSASDAG  360
RIGRLVLPKK CAEAYFPPIS QPEGLPLRVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC  420
IQNMQLQAGD IVTFSRLEPE GKLVMGFRKA SSASLSDQDN ETSQIGDGVS ANGDAELGPS  480
PWSKVDKSGY IAKEVLEAKS SIKKRKSSTL GSKSKRLRIE NEDMIELKLT WEEAQGLLRP  540
APDHVPSIVV IEGFEFEEYE DAPVLGKPTI FAMDNVGHKI QWVQCEDCLK WRKLPLNVLL  600
PSKWTCSGNT WDSERSSCSA AQDLTSEQLE NLLPSRNLVT SKRLKAAKKD IDNVEALGGL  660
DTLANLAILG EGEALLASSQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCQTV  720
KRRFKTLMMK REKKQSEKEA ETTRKQQESS AEKLLDDDPS PSSNAGSASG SPNKKKAVSE  780
VSDDDPNRMK SSTSPFKGQI DLNIQPERED ELSPGSDSGG MMRMLQDASE RYLRMQRFLS  840
SDGDNIPASN HSVSSGGADE KAGSGIMLGG SHQDVSEDHP SAFSLIASES ASASTPAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-643284532127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G043600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437475.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2K1YFG80.0A0A2K1YFG8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-158HSI2-like 1