PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G153100.1
Common NamePOPTR_0010s16290g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 1000aa    MW: 111277 Da    PI: 7.4859
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G153100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.41e-56221383118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e k+rwl+++ei++iL n++k++lt+e++ rp  gs++L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n+
  Potri.010G153100.1  22 EEaKHRWLRPTEILEILRNYQKFKLTAEPPARPAAGSMFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNE 112
                         4559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrrcyw+L+ +le+iv+vhy+evk
  Potri.010G153100.1 113 NFQRRCYWMLDGQLEHIVFVHYREVK 138
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.70817143IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-8120138IPR005559CG-1 DNA-binding domain
PfamPF038592.5E-5023136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.8E-6439528IPR013783Immunoglobulin-like fold
PfamPF018337.2E-6440525IPR002909IPT domain
SuperFamilySSF812964.2E-16440526IPR014756Immunoglobulin E-set
PfamPF127961.6E-7620704IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-16633736IPR020683Ankyrin repeat-containing domain
CDDcd002045.95E-16636733No hitNo description
Gene3DG3DSA:1.25.40.208.3E-17636765IPR020683Ankyrin repeat-containing domain
SMARTSM00248890641670IPR002110Ankyrin repeat
PROSITE profilePS5029717.714641735IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.523641673IPR002110Ankyrin repeat
PROSITE profilePS5008810.606674706IPR002110Ankyrin repeat
SMARTSM002483.9E-4674703IPR002110Ankyrin repeat
SMARTSM002483100713742IPR002110Ankyrin repeat
SuperFamilySSF525401.62E-8844899IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.45848870IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627849878IPR000048IQ motif, EF-hand binding site
PfamPF006120.0044850869IPR000048IQ motif, EF-hand binding site
SMARTSM000155.1E-4871893IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633872896IPR000048IQ motif, EF-hand binding site
PfamPF006127.2E-5875893IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1000 aa     Download sequence    Send to blast
MLMAETRRYI PDHTINIEQI LEEAKHRWLR PTEILEILRN YQKFKLTAEP PARPAAGSMF  60
LFDRKALRYF RKDGHRWRKK KDGKTVREAH EKLKAGSVDV LHCYYAHGED NENFQRRCYW  120
MLDGQLEHIV FVHYREVKEG YKSGVSRLLE DSGTQVENLQ PSPVTSFAQA ASPASTVQTS  180
YASSPNRIDW NGKALSSEFE DVDSRNGPGT SSLAQSIHGS MSHNSSLLSP RVEGFHVLPK  240
NPPGSWLAGA KFDLGTQSSL LPEISSSERS VSRLPGQKFF VDQPGGAEFI TNKLTDATLE  300
GIAVPDTVVS ATGLITDRTA TPQNVIQELD FNLISPQLHN LSGTQTVAAS TAQVENKAND  360
GGANNIESGE LKKLDSFGRW MDKEIGGDCD DSLMASDSGN YWSTLSAENE DKEVSSLSHH  420
MQLDTDSLGP SLSQDQLFSI RDFSPDWAYS GVDTKVLIIG TFLGSKKFSS ETKWGCMFGE  480
IEVSAEVLND CVIRCQVPQH APGRVPFYIT CRNRLSCSEV REFEYRENPF GTASLPAESA  540
QQEEILFQMR LSKLLYLGPG MKSSNCSIED CERCKISTLF SLRNDSKRDL GKVQDNCMVA  600
VGDGIGFRDK LIQSLLMDRL CEWLACKVHE GGKGSDVLDG EGQGVIHLAA SLGYEWAMDL  660
IVAAGGNPNF RDARGRTALH WASYFGREET VIALIRLDAD PTAVDDPNPA FPGGQSAADL  720
ASCRGHKGIS GYLAEAFLSR HLSSLKIDQN EMDHDTAAMA AEKETDIAAQ VASLSSKGEY  780
ELLSLKGSLA AVRKSARAVA LIHAAYRTSS FRQRQLAKSS DDISEISLDL AALGSLNMVQ  840
RRGHFEDYLH SAAVKIQQKY RGWKGRKDFL KIRNRIVKIQ AHVRGHQVRK QYKKVVWSVG  900
IVEKAILRWR RKRTGLRGFR LEKKIGDVKP ESENADEYDF LRISRKQKFA GVEKALARVT  960
SMVRHPEARE QYMRMVTKFE NIKMGDEGCS VSQQDESSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G153100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466825.10.0calmodulin-binding transcription activator 3 isoform X4
TrEMBLA0A2K1YUI60.0A0A2K1YUI6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1