PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G112600.1
Common NamePOPTR_0010s12300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25185.5 Da    PI: 9.3787
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G112600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-1865119256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq + Lee F++++ ++ +++e LA +l+L  rqV vWFqNrRa+ k
  Potri.010G112600.1  65 RKKLRLSKEQSRLLEESFRQHHSLNPRQKEALALQLKLRPRQVEVWFQNRRARSK 119
                         788899***********************************************98 PP
2HD-ZIP_I/II116.91.2e-3765153190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rlskeq++lLEesF++++ L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr +
  Potri.010G112600.1  65 RKKLRLSKEQSRLLEESFRQHHSLNPRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 153
                         69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-1749119IPR009057Homeodomain-like
SuperFamilySSF466893.34E-1854122IPR009057Homeodomain-like
PROSITE profilePS5007116.74661121IPR001356Homeobox domain
SMARTSM003892.0E-1663125IPR001356Homeobox domain
CDDcd000861.75E-1564122No hitNo description
PfamPF000461.6E-1565119IPR001356Homeobox domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PfamPF021831.1E-9121155IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.4E-22121164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAVSRSSSSS LELTMSMPGF VSSPSFPSSV KDFDINQVPS GAAEEEWISA GMEDEEESTD  60
GAPPRKKLRL SKEQSRLLEE SFRQHHSLNP RQKEALALQL KLRPRQVEVW FQNRRARSKL  120
KQTEMECEYL KRWFGSLTEQ NRRLQREVEE LRALKVGPPT VISPHSREPL PASTLTMCPR  180
CERVTTTGVD KGSTKTTRTA VANPTIAATL SSENGAPALQ SRQSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARSKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G112600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465830.11e-164homeobox-leucine zipper protein HOX3
SwissprotQ0JKX15e-84HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH385e-84HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2K1YSC31e-162A0A2K1YSC3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12300.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-70homeobox-leucine zipper protein 17