PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G083400.1
Common NamePOPTR_0010s09350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 749aa    MW: 81996.8 Da    PI: 6.3338
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G083400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.93e-16450488240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          +k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  Potri.010G083400.1 450 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCFNKP 488
                         589**********************************96 PP
2TCR50.73.6e-16535573139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Potri.010G083400.1 535 RHKRGCNCKKSTCLKKYCECYQGGVGCSINCRCEGCKNV 573
                         589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-18449490IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.252450575IPR005172CRC domain
PfamPF036381.1E-11452487IPR005172CRC domain
SMARTSM011142.8E-18535576IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11537572IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MAMDTPEKTQ ITTPLSKFED SPVFNYINSL SPIKPVKSIN IAQTFHSLSF ASLPSVFTSP  60
HVSSHKETRF LKRHNYSDLS KPEFSSGNGN EVCKDEGVVV DAAQLYDNSA ELQENFDPGM  120
SIGESSVEPP SEHLKFATEL PQTLKYGCGS PDSRCGTQTD MVSESAGTSL SLVPFANEAS  180
HKSFLESKKE ATECDWESLI SDAADLLIFN SPIDADGFKE LFQKSPNPVV GFCTSFNEVH  240
KTQIVNPFGS GEQNEMGDPS TQPGETIELT QMDPTQDNLA ANEDPNKYMI SNASKAVSNL  300
HRGMRRRCLD FEKVGSRRKN MDDGSSSSSV LVQLDEKTTP KNTQLVPVKP GGDSSRCILP  360
GIGLHLNALA INSKDSKKIK LETFSSSITL PGSAASFNSR TTDQELDESL TLVSSERDND  420
PNENVVPLVE DFSQTSPKKK RRRLEGEPEA CKRCNCKKSK CLKLYCECFA AGVYCIEPCA  480
CQDCFNKPIH EDTVLATRKQ IESRNPLAFA PKVIRSSESA PEIRDESIKT PASARHKRGC  540
NCKKSTCLKK YCECYQGGVG CSINCRCEGC KNVFGRKDDF PNSGAASMEM EDEPEDETEA  600
SVKNGVDKIL QKTEIQNNDE QNPNSALPTT PLRFCRPLVQ FSSKGKPPRS FLGVGSSCGL  660
YTGQRNGKPN ILRPQSKFEK QCQNVPDDDI PEILQENHSP SSGIKTSSPN SKRVSPPQNN  720
FGSSPGPRSG RKLILQSIPS FPSLTPQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1745457314121Protein lin-54 homolog
5fd3_B5e-1745457314121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1436443PKKKRRRL
2437442KKKRRR
3439443KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.117870.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G083400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175861e-138AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315756.20.0protein tesmin/TSO1-like CXC 2
TrEMBLB9HUS40.0B9HUS4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s09350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-171TESMIN/TSO1-like CXC 2