PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G093000.4
Common NamePOPTR_0009s09600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-PHD
Protein Properties Length: 904aa    MW: 98773.6 Da    PI: 4.648
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G093000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.67.5e-128138541152
                         HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          +++L ++F++n+yp++++++ LA++lg+t +qV  WF N R
  Potri.009G093000.4 813 VTQRLYSYFRENQYPDRAAKASLAEELGITFEQVNKWFVNAR 854
                         6899************************************99 PP
2PHD38.13.6e-13442497151
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ Cg+   +++++++lCdg C++ fH+ Cl ++l +e++p +   wlC+ C++k
  Potri.009G093000.4 442 FCAKCGSkdLNADNDIILCDGaCDRGFHQFCLIPPLLREDIPPDdeGWLCPGCDCK 497
                         699***987778********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.86E-14432500IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.0E-13438497IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.994440497IPR019787Zinc finger, PHD-finger
PfamPF006289.8E-11442497IPR019787Zinc finger, PHD-finger
SMARTSM002491.2E-9442495IPR001965Zinc finger, PHD-type
CDDcd155043.55E-27442494No hitNo description
PROSITE patternPS013590443494IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003892.3E-9802864IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-11805854IPR009057Homeodomain-like
SuperFamilySSF466891.33E-11809858IPR009057Homeodomain-like
PfamPF000462.4E-9812854IPR001356Homeobox domain
CDDcd000861.04E-10814854No hitNo description
PROSITE profilePS5007111.758817860IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MSEAENMGVS PSQVSSQTKS YSCPSQTKLE NTHGFTAEYN CGGYSEEKHK LESEIIQTEA  60
GDSGTAVLQS GAGETVEPST EDVTNNSFTD LDPPPEDARG ATFDESSRPI LTAIDQKLEP  120
GARSVNTACT HGESSKATDS GILQDEPGNT NAASSSCIAN ETSQASLENL ANNSCTEDVG  180
PPYGDASKEE RQKPGSELSE NESTGIDTEL YSGIAIENSE PLTQLVTKRS PIKHVGLLPG  240
DSIIIPANEQ TRPTHDDEDK GPDHEHLETP SRVAIGITRR GRPRGKSASR LSRKIYMLRS  300
LRSSDRVLRS RSQEKPKAPE SSNNSGNVNS TGDKKGKRRK KRRGKNIVAD EYSKIRAHLR  360
YLLNRMSYEQ SLITAYSGEG WKGLSLEKLK PEKELQRATS EITRRKVKIR DLFQHIDSLC  420
SEGRFPSSLF DSEGQIDSED IFCAKCGSKD LNADNDIILC DGACDRGFHQ FCLIPPLLRE  480
DIPPDDEGWL CPGCDCKVDC IGLLNDSQGT NISISDSWEK VFPEAAATAS GQKLDHNFGP  540
SSDDSDDNDY EPDGPDIDKK SQEEESSSDE SDFTSASDEF KAPPDGKEYL GLSSDDSEDD  600
DYDPDAPVLE EKLKQESSSS DFTSDSEDLA ATINGDGLSL EDECHMPIEP RGVSNGRKSK  660
FDGKKMQSLN SELLSMLEPD LCQDESATVS GKRNVDRLDY KKLYDETYGN ISTSSDDDYT  720
DTVGPRKRRK NTGDVATVTA NGDASVTENG MNSKNMNQEL KENKRNPERG TCQNSSFQET  780
NVSPAKSYVG ASLSGSSGKS VRPSAYKKLG EAVTQRLYSY FRENQYPDRA AKASLAEELG  840
ITFEQVNKWF VNARWSFNHS SSTGTSKAES ASGKGSCDGQ VRDSESKNRK SNKQKTNTPK  900
SRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333341KKGKRRKKR
2336342KRRKKRR
3338345RKKRRGKN
4339344KKRRGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G093000.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2337710.0CU233771.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464583.10.0homeobox protein HAT3.1
RefseqXP_024464584.10.0homeobox protein HAT3.1
RefseqXP_024464585.10.0homeobox protein HAT3.1
TrEMBLA0A2K1Z5B70.0A0A2K1Z5B7_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.14e-89Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain