PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G093000.1
Common NamePOPTR_0009s09600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-PHD
Protein Properties Length: 935aa    MW: 102163 Da    PI: 4.6611
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G093000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.67.8e-128448851152
                         HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          +++L ++F++n+yp++++++ LA++lg+t +qV  WF N R
  Potri.009G093000.1 844 VTQRLYSYFRENQYPDRAAKASLAEELGITFEQVNKWFVNAR 885
                         6899************************************99 PP
2PHD383.8e-13473528151
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ Cg+   +++++++lCdg C++ fH+ Cl ++l +e++p +   wlC+ C++k
  Potri.009G093000.1 473 FCAKCGSkdLNADNDIILCDGaCDRGFHQFCLIPPLLREDIPPDdeGWLCPGCDCK 528
                         699***987778********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.3E-14463531IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.3E-13469528IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.994471528IPR019787Zinc finger, PHD-finger
CDDcd155046.62E-27473525No hitNo description
PfamPF006281.0E-10473528IPR019787Zinc finger, PHD-finger
SMARTSM002491.2E-9473526IPR001965Zinc finger, PHD-type
PROSITE patternPS013590474525IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003892.3E-9833895IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-11836885IPR009057Homeodomain-like
SuperFamilySSF466891.37E-11840889IPR009057Homeodomain-like
PfamPF000462.5E-9843885IPR001356Homeobox domain
CDDcd000861.11E-10845885No hitNo description
PROSITE profilePS5007111.758848891IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MSEAENMGVS PSQVSSQTKS YSCPSQTKLE NTHGFTAEYN CGGYSEEKHK LESEIIQTEA  60
GDSGTAVLQS GAGETVEPST EDVTNNSFTD LDPPPEDARG ATFDESSRPI LTAIDQKLEP  120
GARSVNTACT HGESSKATDS GILQDEPGNT NAASSSCIAN ETSQASLENL ANNSCTEDVG  180
PPYGDASKGN QIDKSSYPQQ TISGHALELL SDRACCERSE ERQKPGSELS ENESTGIDTE  240
LYSGIAIENS EPLTQLVTKR SPIKHVGLLP GDSIIIPANE QTRPTHDDED KGPDHEHLET  300
PSRVAIGITR RGRPRGKSAS RLSRKIYMLR SLRSSDRVLR SRSQEKPKAP ESSNNSGNVN  360
STGDKKGKRR KKRRGKNIVA DEYSKIRAHL RYLLNRMSYE QSLITAYSGE GWKGLSLEKL  420
KPEKELQRAT SEITRRKVKI RDLFQHIDSL CSEGRFPSSL FDSEGQIDSE DIFCAKCGSK  480
DLNADNDIIL CDGACDRGFH QFCLIPPLLR EDIPPDDEGW LCPGCDCKVD CIGLLNDSQG  540
TNISISDSWE KVFPEAAATA SGQKLDHNFG PSSDDSDDND YEPDGPDIDK KSQEEESSSD  600
ESDFTSASDE FKAPPDGKEY LGLSSDDSED DDYDPDAPVL EEKLKQESSS SDFTSDSEDL  660
AATINGDGLS LEDECHMPIE PRGVSNGRKS KFDGKKMQSL NSELLSMLEP DLCQDESATV  720
SGKRNVDRLD YKKLYDETYG NISTSSDDDY TDTVGPRKRR KNTGDVATVT ANGDASVTEN  780
GMNSKNMNQE LKENKRNPER GTCQNSSFQE TNVSPAKSYV GASLSGSSGK SVRPSAYKKL  840
GEAVTQRLYS YFRENQYPDR AAKASLAEEL GITFEQVNKW FVNARWSFNH SSSTGTSKAE  900
SASGKGSCDG QVRDSESKNR KSNKQKTNTP KSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364372KKGKRRKKR
2367373KRRKKRR
3369376RKKRRGKN
4370375KKRRGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G093000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2337710.0CU233771.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464583.10.0homeobox protein HAT3.1
RefseqXP_024464584.10.0homeobox protein HAT3.1
RefseqXP_024464585.10.0homeobox protein HAT3.1
TrEMBLA0A2K1Z5B70.0A0A2K1Z5B7_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-88Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain