PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G097800.1
Common NamePOPTR_0008s09740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family YABBY
Protein Properties Length: 181aa    MW: 20043.9 Da    PI: 9.3548
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G097800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY165.44.3e-51111644162
               YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                         + sse++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC +l  ++ +  +q + + ++ ++   + +  ++k+  ++ +   +  ++   
  Potri.008G097800.1  11 VPSSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCNNLSFLSTRPPNQGQ-CLDQYHRLSLQGVSSNEKFLFKEKQGFCTDIRKG-- 98 
                         5789************************************98665555544333.3333333333333333333322222222222222.. PP

               YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                           +s++ s+++++ vp vp v++PPek+ r Psaynrf+keei+rika++P+i hreafs+aaknWa 
  Potri.008G097800.1  99 --ESSSSSTSSEQPVPTVPFVVKPPEKKHRLPSAYNRFMKEEIKRIKAADPEIPHREAFSTAAKNWAR 164
                         ..222235677899****************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.3E-5513164IPR006780YABBY protein
SuperFamilySSF470951.7E-7114164IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-4119164IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MNLEEKASTE VPSSEHLCYV RCNFCNTVLA VGIPCKRLLD TVTVKCGHCN NLSFLSTRPP  60
NQGQCLDQYH RLSLQGVSSN EKFLFKEKQG FCTDIRKGES SSSSTSSEQP VPTVPFVVKP  120
PEKKHRLPSA YNRFMKEEIK RIKAADPEIP HREAFSTAAK NWARARYLPK SGAGSGSPNI  180
*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269|PubMed:14729915}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G097800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311351.21e-133protein CRABS CLAW
SwissprotQ76EJ07e-61YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLB9HIG41e-131B9HIG4_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09740.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Representative plantOGRP90691114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-50YABBY family protein