PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G008200.1
Common NamePOPTR_0007s14590g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 274aa    MW: 30530.6 Da    PI: 8.4847
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G008200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.7e-19129183256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Potri.007G008200.1 129 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 183
                         788899***********************************************98 PP
2HD-ZIP_I/II125.13.2e-40129218191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l
  Potri.007G008200.1 129 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEMDCEFLKKCCETLTDENRRLQKELQDLK-SL 218
                         69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-18115183IPR009057Homeodomain-like
SuperFamilySSF466894.14E-19116186IPR009057Homeodomain-like
PROSITE profilePS5007117.718125185IPR001356Homeobox domain
SMARTSM003893.3E-16127189IPR001356Homeobox domain
PfamPF000463.0E-16129183IPR001356Homeobox domain
CDDcd000863.98E-17129186No hitNo description
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
SMARTSM003403.2E-24185228IPR003106Leucine zipper, homeobox-associated
PfamPF021831.5E-9185218IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGCLDDGCNT GLVLGLGFTT TNLENTSRPA DNNKRLIKPQ IKPLMTGFEP SLSLGLSAET  60
YSLVDGKKGC EESIGAHDQL YRQASPHSAV SSFSSGRVKR ERDLSSEDIE VERVSSRVSD  120
EDEDGSNARK KLRLTKEQSA LLEESFKQHS TLNPKQKQAL ARQLNLRPRQ VEVWFQNRRA  180
RTKLKQTEMD CEFLKKCCET LTDENRRLQK ELQDLKSLKM AQPFYMHMPA ATLTMCPSCE  240
RIGGVGEGAS KSPFSMATKP HFYNSFTNPS AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.111680.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G008200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310877.20.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-110HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLB9HFT70.0B9HFT7_POPTR; HD-ZIP family protein
STRINGPOPTR_0007s14590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-103HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]