PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G251200.1

Common Name

POPTR_0006s26740g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CPP

Protein Properties

Length: 848aa MW: 92754.1 Da PI: 4.9861

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G251200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.9	2.6e-15	497	535	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k gCnCk+s C+kkYCeC++a++ Cs+ C+Ce+C+N Potri.006G251200.1 497 RHKTGCNCKRSMCVKKYCECYQANVGCSNACRCEGCRNI 535 5899**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	19.866	412	537	IPR005172	CRC domain
SMART	SM01114	1.5E-15	497	538	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	9.7E-11	500	534	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 848 aa Download sequence Send to blast
MEGSPESFLC MLSRIVDESP FSNYISNLSP IKPVNTAHVA HGLLGINSPP LVFKSPHTAS 60 DRQINLLRRF QYPQISGAET SKIDDGSKKS IDGPEDMGKS SICLTSNLIV DAQTSDNVNN 120 SEQDQPGSSS GCVDEYLSDP VDADCADSVN LVNPNVKKSD DALQSSESNL TNLKIVESDD 180 INDKGTKGEV SQARPEQDGE DPKEQPTSEN KMEKIKEEGS LAKQPSHVCP NFGSDLLVDH 240 ASRQQCYTSG AQVAHPHELI QLITYNGSEV SQLQRGMSRR CLQFEQAQQE TTKDGTYSPN 300 PAINLFGSIS PASSTELEIL DSSQVELTIS SHKEQTMSAM FSANISGKCP VAVSKPSGIG 360 LHLNSIVNTL PMGSGASGPI MSHHLVENKI SCSKLSNLVE RVSLTAGDGV LQTKASLATS 420 STTSESFHNM ESFNNLQPPE HQGCFNRPEY EDTVLETRQQ IESRNPLAFA PKIVQHVTEF 480 QAIDVEDVDL FTPYSGRHKT GCNCKRSMCV KKYCECYQAN VGCSNACRCE GCRNIHGRKE 540 EYAMTQEIVS NRANEESLEG MADEKLEMVA NNKFLHTELY DLRSLTPPTP SFEYLRYYFF 600 DEDAFVLESH EKDAPKSRLL PGRYVLSSES DFSMLPSYAK SVSSPSNSQG NDMLPKTSIT 660 LDIVSHGQEL DYNITEITGQ FSPQFDELAD FSDHTPLPNP SSIMMASSAS SKTQDKANVS 720 QPRVYPGSAR LSSGSSLHWY SSPITPMTRL GETKNQAQDS DCGLYDILED DTPEILKDSS 780 APITSVKASS PNKKRVSPPH SHIREFQSSS SAGLKSGRGR KFILKSVPSF PPLTPCLDSK 840 DCTQQKY*

Sequence ? help Back to Top

Protein Sequence Length: 848 aa Download sequence Send to blast

MEGSPESFLC MLSRIVDESP FSNYISNLSP IKPVNTAHVA HGLLGINSPP LVFKSPHTAS  60
DRQINLLRRF QYPQISGAET SKIDDGSKKS IDGPEDMGKS SICLTSNLIV DAQTSDNVNN  120
SEQDQPGSSS GCVDEYLSDP VDADCADSVN LVNPNVKKSD DALQSSESNL TNLKIVESDD  180
INDKGTKGEV SQARPEQDGE DPKEQPTSEN KMEKIKEEGS LAKQPSHVCP NFGSDLLVDH  240
ASRQQCYTSG AQVAHPHELI QLITYNGSEV SQLQRGMSRR CLQFEQAQQE TTKDGTYSPN  300
PAINLFGSIS PASSTELEIL DSSQVELTIS SHKEQTMSAM FSANISGKCP VAVSKPSGIG  360
LHLNSIVNTL PMGSGASGPI MSHHLVENKI SCSKLSNLVE RVSLTAGDGV LQTKASLATS  420
STTSESFHNM ESFNNLQPPE HQGCFNRPEY EDTVLETRQQ IESRNPLAFA PKIVQHVTEF  480
QAIDVEDVDL FTPYSGRHKT GCNCKRSMCV KKYCECYQAN VGCSNACRCE GCRNIHGRKE  540
EYAMTQEIVS NRANEESLEG MADEKLEMVA NNKFLHTELY DLRSLTPPTP SFEYLRYYFF  600
DEDAFVLESH EKDAPKSRLL PGRYVLSSES DFSMLPSYAK SVSSPSNSQG NDMLPKTSIT  660
LDIVSHGQEL DYNITEITGQ FSPQFDELAD FSDHTPLPNP SSIMMASSAS SKTQDKANVS  720
QPRVYPGSAR LSSGSSLHWY SSPITPMTRL GETKNQAQDS DCGLYDILED DTPEILKDSS  780
APITSVKASS PNKKRVSPPH SHIREFQSSS SAGLKSGRGR KFILKSVPSF PPLTPCLDSK  840
DCTQQKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G251200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024460158.1	0.0	CRC domain-containing protein TSO1 isoform X1
Refseq	XP_024460159.1	0.0	CRC domain-containing protein TSO1 isoform X1
TrEMBL	A0A2K2A821	0.0	A0A2K2A821_POPTR; Uncharacterized protein
TrEMBL	A0A3N7F4V8	0.0	A0A3N7F4V8_POPTR; Uncharacterized protein
STRING	POPTR_0006s26740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-34	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Potri.006G251200.1
Entrez Gene	7471580