PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G230700.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 601aa    MW: 66252.2 Da    PI: 6.6103
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G230700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.81.8e-085195571854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Potri.006G230700.3 519 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 557
                         5887779******************************88 PP
2BELL78.59.5e-26391460272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +++l++k+++Ll+ll+ Vd+rY+q+ ++++tvis+F+a+++l++ +++t++Al++iS+  + L+d+i++qi
  Potri.006G230700.3 391 KRALEAKRTQLLTLLQVVDERYSQCLDEIHTVISAFHAATELDP-QIHTRFALQTISFLCKRLRDRISNQI 460
                         6899****************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.9E-25308458IPR006563POX domain
PfamPF075264.3E-27313457IPR006563POX domain
CDDcd000865.42E-11501561No hitNo description
SMARTSM003892.2E-5501565IPR001356Homeobox domain
SuperFamilySSF466896.42E-15503569IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-25504567IPR009057Homeodomain-like
PfamPF059209.7E-15518557IPR008422Homeobox KN domain
PROSITE profilePS5007110.851520561IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MHNIMENGLF GVPIDMAGRN SVATDRSSQR TPNSLVQFDS FNLNNHSQTV VGFTMLPTLQ  60
GEPINDLHAS IHLANRSSVM NSEALVTSLG RNVVGDALPG CSRSISNTPF DEQFGGGTTI  120
SSSSLATLLA TRSGLQENPN DLAISGPSSY PLDEFRSFVS NDCTNALSSS FASSLNYGCG  180
EVFGNMNSKE DFDRFPAPLE LGGRTSVRAG FQPYSSIGSL QLNSWVEPNG VNVSAGDPFA  240
SGKPTNELSL SLSTSQPSVI DRSIPDQCLE ISCNHLTRHC LKETRSCSEQ TSSSSKELSL  300
SCHSYNAGQF SQVLVGSRYL HVIQEILAKI ASYSLENVDQ ISSSTVWFKT GASTPFSSSY  360
PTEGGMLSMG SDESPGVNGR FEVQMDPALQ KRALEAKRTQ LLTLLQVVDE RYSQCLDEIH  420
TVISAFHAAT ELDPQIHTRF ALQTISFLCK RLRDRISNQI LAMGAQLDSG DTIEIEGSFE  480
SSYLQKQWTL QQLKKKDHPL WRPQRGLPER SVSVLRAWMF QNFLHPYPKD AEKHLLAVKS  540
GLTRSQVSNW FINARVRLWK PLIEEMYAEM NRRKAHQIEE GTYSNHRGQI SISNPRFNVN  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-14507565563Homeobox protein Meis2
4xrm_B3e-14507565563Homeobox protein Meis2
5bng_A3e-14507565159Homeobox protein Meis2
5bng_B3e-14507565159Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G230700.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460393.10.0homeobox protein ATH1
RefseqXP_024460394.10.0homeobox protein ATH1
RefseqXP_024460395.10.0homeobox protein ATH1
RefseqXP_024460396.10.0homeobox protein ATH1
RefseqXP_024460397.10.0homeobox protein ATH1
RefseqXP_024460398.10.0homeobox protein ATH1
SwissprotP487311e-112ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2K2A6V10.0A0A2K2A6V1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-102homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]