PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G108300.1
Common NamePOPTR_0006s10880g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 922aa    MW: 100330 Da    PI: 6.927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G108300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18330430199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Potri.006G108300.1 330 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLQAGDTVTFSRMD- 418
                         99**************************555567778***************9989999999***9.********************876. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          e++lv++++++
  Potri.006G108300.1 419 PEGKLVMGFRKA 430
                         777788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-30324438IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20327430IPR015300DNA-binding pseudobarrel domain
CDDcd100173.74E-23328429No hitNo description
PROSITE profilePS5086311.18330431IPR003340B3 DNA binding domain
PfamPF023624.3E-16330430IPR003340B3 DNA binding domain
SMARTSM010192.4E-21330431IPR003340B3 DNA binding domain
PROSITE profilePS5105013.76595645IPR011124Zinc finger, CW-type
PfamPF074961.7E-10600642IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MASSSSSIKS CMNATCGVST SNSGGWRKGW ALRSGDFAIL CDNCGSAYEQ SIFCEVFHSK  60
DSGWRECTSC SKRLHCGCIA SRSLLELLDG GGVNCTSCSR TSGVGPMNGD EKPNGFGKPK  120
VDTVGELHSA SADSQLAAET KLMQLGNCID GIGTRNLLQL QSDETNGSYR KMKQEDILPP  180
VGEIASTIFS NFNQASNASC QTAKPEIHRT VTAAKDLYES LAQTNLSMSL GSSLGNPNLF  240
PGGVVDERVP SKASSPLQQG PRSRHLLPKP PKSALSMDAN AGMVSQIRVA RPPAEGRGRN  300
QLLPRYWPRI TDQELQQISG DPNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS  360
QPEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMKLQAGD TVTFSRMDPE  420
GKLVMGFRKA SNSIAMQDTQ PSAIPNGVPS SESYFSGVFE NLPIISGYSG LLQSLKGSTD  480
THLSALSKHL HSASGDISWN KSEKQEDRTR DGLLLPSLMV PERKRTRNIG SKSKRLLIDS  540
LDAFELKLTW EEAQDLLRPA PSVKPSIVTI EDHDFEEYEE PPVFGKRSIF IVRSIGGQEQ  600
WAQCDSCSKW RRLPVDVLLP PKWTCVDNAW DQSRCSCSAP DELAPRELEN LLRLNKDFKK  660
RKITSSHQPA QELESSGLDA LANAAILGDV GEQSTTAVVA TTTKHPRHRP GCSCIVCIQP  720
PSGKGKHKPT CTCNVCMTVK RRFKTLMMRK KKRQSEREAE IAQKTQHLVG PKDEAEIESS  780
SKLASIPRDP SDNEARSGNE LESKGQSNNL SNKLADSGKG HLDLNCHPDR EEDSQAGLSR  840
MSMTSFLQVA TLPLDTYLKQ NGLASLSEQQ ASSASHVPPQ TGENEGKIND DCQPATAAPE  900
QESGGEENDE PGPDQSQNDP V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-693084372131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1739750KRRFKTLMMRKK
2739752KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G108300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9020511e-120HQ902051.2 Populus laurifolia MORC family ATPase (VP) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460273.10.0B3 domain-containing transcription repressor VAL2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2K2A0770.0A0A2K2A077_POPTR; Uncharacterized protein
STRINGPOPTR_0006s10880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]