PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G075500.1 | ||||||||
Common Name | POPTR_0006s07520g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 726aa MW: 81660.2 Da PI: 9.8756 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32 | 2.1e-10 | 507 | 551 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F +n ps++ +e L+k+lgL+ +V+ WF+N R+ Potri.006G075500.1 507 PDAVEKLRQVFVENELPSRTVKENLSKELGLEPGKVSKWFKNSRY 551 67899**************************************97 PP | |||||||
2 | PHD | 34.5 | 4.7e-12 | 239 | 293 | 1 | 50 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ ++++vlCd +C+ +fH+kCl+++l++e++p g w+C+ C++ Potri.006G075500.1 239 FCAKCKLneVSPDNDIVLCDgTCNCAFHQKCLEPPLDTESIPPGdqGWFCKFCEC 293 699998865556********56********************9999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 5.54E-13 | 231 | 296 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 3.0E-11 | 235 | 293 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.291 | 237 | 294 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 1.36E-31 | 239 | 291 | No hit | No description |
Pfam | PF00628 | 1.9E-9 | 239 | 293 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.7E-7 | 239 | 292 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 240 | 291 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 5.3E-12 | 492 | 550 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-10 | 492 | 551 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.39 | 496 | 556 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-10 | 498 | 560 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.13E-9 | 499 | 558 | No hit | No description |
Pfam | PF00046 | 6.2E-8 | 507 | 551 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MGDSGKTSKL QDSHKCSPSD TVTGSLLIKS LKIKKDSKIS PRKGQKTKTK SKPKPIPHLK 60 TIISSAVSKR KVSPKGIGNG STSRKLIHRK ILHKALDKKA SRKGASSGLQ LSTIDSKGNG 120 KNGDEGAIKK LKKRKPKKRQ RDKVKLDEPS RLQRRARYLM IKMKLDQNLI DAYSGEGWKG 180 QSREKIRPEK ELLRARKQIL KCKLGLRDII RQVDSLSTVG CIEETVMAPD GSVSHEHIFC 240 AKCKLNEVSP DNDIVLCDGT CNCAFHQKCL EPPLDTESIP PGDQGWFCKF CECRMDIIEA 300 MNAHLGTHFS EDSSWQDIFT EEAAIPDAGN VLLNPEEEWP SDDSEDDNYD PERRDNIMSE 360 AGTDDDASDD ISSSTSLGWS SDGEVFLGSR RWEMHGLDFR NNSIYSSLDS DETSDGEIVC 420 GRRQRRAIDY KKLYDEVFGK DAPAHEQASE DEDWGPGKRK RREKESNAAS TLMTLCESKK 480 KSKSDETIEG MMNLPPQTRR PIFRLPPDAV EKLRQVFVEN ELPSRTVKEN LSKELGLEPG 540 KVSKWFKNSR YLALKSRKVE KGEQLHNSSS KVSAEPTLNV MEGKTADLSQ DSWEETEVCI 600 PKNLKRILQR KKLKSISRSL RKNEQKRGSY ESPTKSNEMN AECSDDVSLK KLLKAKPKGV 660 KKKVNPISVA AEYDMERLCR AKAILEKMKQ KVVKLQNGKA RKSSKTRPLE EFIVYIPIAE 720 LRGKN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 134 | KKLKKRK |
2 | 458 | 463 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G075500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309010.1 | 0.0 | pathogenesis-related homeodomain protein isoform X4 | ||||
Swissprot | P48785 | 1e-158 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | B9HAZ3 | 0.0 | B9HAZ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s07520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 | Representative plant | OGRP1830 | 15 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-155 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G075500.1 |
Entrez Gene | 7474731 |
Publications ? help Back to Top | |||
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