PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G051100.1
Common NamePOPTR_0005s05270g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 770aa    MW: 84432.8 Da    PI: 6.333
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G051100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.19.9e-15481520241
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         ++k+CnCk+skClk+YCeCfaag +C e C+C +C+N+  
  Potri.005G051100.1 481 SCKRCNCKRSKCLKLYCECFAAGLYCIEPCSCLECSNNPA 520
                         689**********************************975 PP
2TCR482.5e-15566604139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks+ClkkYCeCf+ g+ Cs+ C+Ce+CkN+
  Potri.005G051100.1 566 RHKRGCNCKKSSCLKKYCECFQGGVGCSSYCRCEGCKNT 604
                         589***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-16480521IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.598481606IPR005172CRC domain
PfamPF036385.4E-11483518IPR005172CRC domain
SMARTSM011141.2E-14566607IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.8E-12568604IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MELNTPNKNQ IPATNPLSQF EDSPVFNYIN NLSPIELVKS MHNGQAFNFP SFASPLSVFA  60
SPQLSSQSDA RSFMRRDQFS EPSKPELLQS KDENDTSIGV FEAAQLTGLS VEQSECSTPA  120
NSSKGVITKL PGEHMELAIE EPDTLKYYCA SPDDNIIMVP LKAIIEPQMA GDPNERYCSR  180
KSEKDLRKIG QTGQNEDEAG CDWVALISDV ADILTLEPSI DEESAEKQKM VDPGTISFIS  240
NVLQAPQDNS DDSETSYYAG SSQQREIGEP GIQPVESGEQ NEAHQTPSVF SGTLPDKPIV  300
NDAAAKVDIR GKSYQSSSKQ HKIRRRCLVF EMGAHKKKLA FESSSSTSSQ SDHMGASIEK  360
HATPRTDKGK TLSALPGRGI GLHLNALTAT SSGNAVKIET LASGKQEISQ PPSPAAHMAS  420
GLDPVSKSLA LITVETDFVP FDNEDKVMEN VPQTSMVVTE DFVISSPKMK RQKFEYLGAS  480
SCKRCNCKRS KCLKLYCECF AAGLYCIEPC SCLECSNNPA HEDTVLETRR QIESRNPLAF  540
APKVIRNSDS VSEFGEETNK TPASARHKRG CNCKKSSCLK KYCECFQGGV GCSSYCRCEG  600
CKNTFGCKNG VEENDLKWGE SKIHENTSNL NLLDIIEKGE DHPDLMVPSK DSRSPVHPQI  660
PISGQLSGSS LCDVGPSTKM RPIQRFRTNF FYHQPKYEKH LQVIPEDETP EILNRNCLPT  720
SGVKSVSPNS KRVSPPHHGF GPSTTWRRGR KLILRSVSPS PSLNPPCEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1748560314120Protein lin-54 homolog
5fd3_B1e-1748560314120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G051100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456352.10.0protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A2K2ABV70.0A0A2K2ABV7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-92TESMIN/TSO1-like CXC 2