PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G035300.1
Common NamePOPTR_0004s03530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 919aa    MW: 100849 Da    PI: 6.765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G035300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-18362461198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ + 
  Potri.004G035300.1 362 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLRVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE- 450
                         89**************************555567778***************9989999999***9.********************766. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++lv+++++
  Potri.004G035300.1 451 PEGKLVMGFRK 461
                         77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359060117IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.109.9E-31358470IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-21360461No hitNo description
SuperFamilySSF1019362.62E-19360462IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.251362463IPR003340B3 DNA binding domain
PfamPF023621.0E-15362461IPR003340B3 DNA binding domain
SMARTSM010192.4E-18362462IPR003340B3 DNA binding domain
PROSITE profilePS5105014.601588638IPR011124Zinc finger, CW-type
PfamPF074966.2E-13593635IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MSSSPPHLPT STTATTANNN NTSCSSSSTA LSRKCFNSDC TDFKSRKGWR LRSGDFAELC  60
DRCASAYEEG SFCETFHLRA SGWRCCESCG KGVHCGCIVS IQTFTLLDAG GIACMACERK  120
SFVLESNPQI LLTATSADVT SNPAWSPLFY HAPFPERLKD LSVKSWSQLA GSGPVPWRQA  180
PSLFNPSAAQ SELQTRMPYE VDRLNTGERF SAPSLEKRKV EDFSEKFING NLRIRLQDIV  240
ENGNAGIIGE EQPQPSSSLM EDASGQQFGI TIPYKSISES NSQIEGSVNA LQPAPPPPFT  300
KHFHGSLHNG VDSSVDGHIR NGKPRTDARG RSQLLPRYWP RFTDGELQQI SGNSNSVIKP  360
LFEKMLSASD AGRIGRLVLP KKCAEAYFPP ISQPEGLPLR VQDSKGKEWI FQFRFWPNNN  420
SRMYVLEGVT PCIQNMQLQA GDIVTFSRLE PEGKLVMGFR KATSAPPSDQ DNETSQTGNG  480
VSTKGDAELD PSPWSKVDKS GYIAKEVLEG KSSIRKRKSS TLGSKSKRLR IENEDMIELK  540
LTWEEAQGLL RPPPDHVPSI VAIEGFEFEE YEDAPVLGKP TIFATDNVGQ KIQWVQCEDC  600
LKWRKLPANA LLPSKWACSS NTWDPERSSC SVAQELTAEQ LEDLLPSCNL VVTSKRSKDA  660
KKDIDRVEAL EGLDTLANLA ILGEGEAFPA SSQATTKHPR HRPGCSCIVC IQPPSGKGPK  720
HKQTCTCNVC QTVKRRFKTL MMKREKKQSE KEAETKQSEK EAETTRKRQQ EPSAEKLLDD  780
EPSPSSNTGS ESGSPNKKKT VSEGSDDDPS RMKSSTSPFK GQIDLNIQPE REDELSPGSD  840
SGGMMRMLQD ATETYLRMQR FLSSDGDNNP SGNHMLSSGG TREKVSDVIM LGSSHQDADK  900
DHPSAFSMNA SASTPATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C5e-643404651126B3 domain-containing transcription repressor VAL1
5yzz_C5e-643404651126B3 domain-containing transcription repressor VAL1
5z00_C5e-643404651126B3 domain-containing transcription repressor VAL1
5z00_G5e-643404651126B3 domain-containing transcription repressor VAL1
5z00_K5e-643404651126B3 domain-containing transcription repressor VAL1
5z00_M5e-643404651126B3 domain-containing transcription repressor VAL1
6j9a_A5e-643404652127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G035300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455352.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A3N7EXY80.0A0A3N7EXY8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-160HSI2-like 1