PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G170600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 981aa    MW: 109542 Da    PI: 5.5249
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G170600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.51.5e-54131273116
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwlk+ e++ iL+n++k+++t+e+ ++p+sgsl+L+n++++r+fr+DG+sw+kkkdg+tv E+he+LKvg+ve+++cyYah+e+np
  Potri.003G170600.1  13 EEaQTRWLKPAEVLFILQNHDKYQFTKEPLQKPTSGSLFLFNKRILRFFRRDGHSWRKKKDGRTVGEAHERLKVGNVETINCYYAHGEQNP 103
                         55599************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhyle 116
                         +fqrr+yw+L+ ++e+ivlvhy+e
  Potri.003G170600.1 104 NFQRRSYWMLDPAFEHIVLVHYRE 127
                         **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.4228134IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7511129IPR005559CG-1 DNA-binding domain
PfamPF038598.4E-4814127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.2E-9414503IPR013783Immunoglobulin-like fold
PfamPF018339.7E-10419502IPR002909IPT domain
CDDcd001021.46E-5419503No hitNo description
SuperFamilySSF812965.6E-19420503IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.5E-15615711IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.671617709IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.8E-16619711IPR020683Ankyrin repeat-containing domain
CDDcd002042.19E-9637709No hitNo description
PfamPF127961.4E-7638710IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.381650682IPR002110Ankyrin repeat
SMARTSM002484.4E-4650679IPR002110Ankyrin repeat
SMARTSM002483800689718IPR002110Ankyrin repeat
SMARTSM0001518767789IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584768797IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.48E-8770873IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.24821843IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.95822851IPR000048IQ motif, EF-hand binding site
PfamPF006120.021824842IPR000048IQ motif, EF-hand binding site
SMARTSM000154.8E-5844866IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.956845869IPR000048IQ motif, EF-hand binding site
PfamPF006123.9E-5847866IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MLQSGYDINS LFEEAQTRWL KPAEVLFILQ NHDKYQFTKE PLQKPTSGSL FLFNKRILRF  60
FRRDGHSWRK KKDGRTVGEA HERLKVGNVE TINCYYAHGE QNPNFQRRSY WMLDPAFEHI  120
VLVHYREISE GKPSPGSAAQ LSPGFSYSPS SNTSQTQGSS SAISGVYEQH QSLSSPASVE  180
VNSGLDIKDN GVDSTAELTS FANNEVTQCL RRLEEQLSLN KDNIKEIGSF GGDEGDTNDS  240
KILEYVNHIS KEDQSKNLLR GSQYIVDYQS YGGLSGKQLE RNNLAPLQDA GDSGAYQQSY  300
SQYYTDGSKE DLSWNEVFES YNTSSGIEYQ EKPKSSLMME TAQEQENSLW INFAETNVGN  360
SSLLPPQEFE GFETPTYSSV IETHENNADC YAMLYDQGHL GIPIEADSNL TVAQQQKFSI  420
REISPEWGYA TEATKVIIVG SFLCDPSESS WTCMFGDTEV PLQIIQEGVI RCEAPPHQPG  480
KVTLCITSGN RESCSEIRDF DYRAKDSSCA HCNFSQTEAT KSPEELLLLV RFVQMLLSDF  540
SLQRGDNIET GIHLLQKLKA DDDSWGYIIE ALLVGSGTSS TTVDWLLQQL LKDKLRQWLS  600
SKSQEEHDHP GCSLSKKEQG IIHMLAGLGF EWALSPILSH GVSINFRDIN GWTALHWAAR  660
FGREKMVAAL LASGASAGAV TDPSSKDPIG KTAASIAASS GHKGLAGYLS EVALTSHLSS  720
LKLKESELSK GSAEIEAERA VDSISKESFA ANEDQVSLKD TLAAVRNAAQ AAARIQSAFR  780
AHSFRKRQEI EASLLDEYGI SAGDIQGLSA MSKLAFRNSQ DINSAALSIQ KKYRGWKGRK  840
DFLELRQKVV KIQAHVRGYR VRKNYKVICW AVGILDKVVL RWRRKGIGLR GFRNETESID  900
EREDDDILKM FRKQKVDGTI DEAFSRVLSM VDSPDARQQY RRMLQRYRQA KDELGTSEAA  960
ASTSLADANE MENDDLYRFQ *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G170600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453205.10.0calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2K2B8F50.0A0A2K2B8F5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s13700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]