PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G082800.1
Common NamePOPTR_0003s08080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 541aa    MW: 60284.5 Da    PI: 7.0362
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G082800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Potri.003G082800.1  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                        99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-10545No hitNo description
CDDcd002026.41E-16654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003202.1E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF139191.6E-11282391IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVSRLKSVSI SKNKEVKLLK RKPNYDNRVA LDYNQGYRKV VDEDTSNRSS SGSAISNPES  120
CAQFGSAEAS DLTGPAQSVV WDSLVPSRKR TCVNRPKPSS VEKLTKDLYT ILHEQQSSCF  180
SGSSEEDLLF DNETPMVSVE IGHGSVLIRH PSSIARDEES EASSLSVENK QYLTNEAYSH  240
PVILPVHNEN KSVNTTYPIT ETTKNLTGQG MQQEQLKRDK FPHEKVHILG SHNSPLCSID  300
LNDILNFEEF ARHLTNEEQQ QLLKYLPPLD TTKLPNSIES MFDSPQFKEN INSYQQLLSE  360
GVFDLSFSEA KTEDCKTLKR LTLSNFLKSK WVERYHLLKK CKNSNGKSFV GKGPNPDVVA  420
MSNIAGAKRS RDSPSQKFSE VKLMKSPKRI IMKATYENKE LIDNDGSCFS PRSLFALPTD  480
GSSLMLDSLH FVDESSDQDL LLDIPSNGSF AQAELFYPTN SFGQQASTSS SSIYPHLGRP  540
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.87120.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G082800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470260.0EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385556.10.0GATA transcription factor 26 isoform X1
SwissprotQ8W4H11e-162GAT26_ARATH; GATA transcription factor 26
TrEMBLA9PFA90.0A9PFA9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-166GATA transcription factor 26
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]