PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G142800.1
Common NamePOPTR_0002s14380g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 247aa    MW: 27390.1 Da    PI: 6.5032
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G142800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.4e-18163197135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Potri.002G142800.1 163 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 197
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-731244IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.741157193IPR000679Zinc finger, GATA-type
SMARTSM004016.0E-16157207IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14160220No hitNo description
Gene3DG3DSA:3.30.50.109.5E-14161195IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.82E-14162209No hitNo description
PfamPF003206.4E-16163197IPR000679Zinc finger, GATA-type
PROSITE patternPS003440163188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDVYGGVSTS APDYFLIDDL LDFSNDDLLT SSTDHHHLPP PETSSIHHHH HFFPSPTTYI  60
NNTSSLSTDF TDHLSVPSDD VAELEWLSQF MEDSFTDFPS TINIPTDTSS RIKSCSKRSR  120
TTTTATSSSA DIETAVTGES RVKKENNGAP HSSAETEGGA RRCTHCASEK TPQWRTGPLG  180
PKTLCNACGV RYKSGRLVPE YRPAASPTFV LTQHSNSHRK VLELRRQKEM MLRQQQQHGY  240
QGYEVC*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G142800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301258.20.0GATA transcription factor 4
SwissprotO497413e-68GATA2_ARATH; GATA transcription factor 2
TrEMBLB9GPB10.0B9GPB1_POPTR; GATA transcription factor
STRINGPOPTR_0002s14380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.15e-61GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]