PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G136400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 321aa    MW: 35667.1 Da    PI: 8.7114
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G136400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-18155209256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq  +Lee F+++++++ +e+  LAk+l+L  rqV vWFqNrRa+ k
  Potri.002G136400.1 155 RKKLRLSKEQSSVLEENFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTK 209
                         788899***********************************************98 PP
2HD-ZIP_I/II124.74.2e-40155244191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL kev+eLr +l
  Potri.002G136400.1 155 RKKLRLSKEQSSVLEENFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKTCCENLTEENRRLLKEVQELR-AL 244
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.0E-3526128IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466899.84E-19145212IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-18149214IPR009057Homeodomain-like
PROSITE profilePS5007117.556151211IPR001356Homeobox domain
SMARTSM003891.5E-15153215IPR001356Homeobox domain
PfamPF000461.1E-15155209IPR001356Homeobox domain
CDDcd000863.53E-15155212No hitNo description
PROSITE patternPS000270186209IPR017970Homeobox, conserved site
PfamPF021831.7E-10211245IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.2E-24211254IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
HTSCKDCRRN SAGSRQAIPE GEREKMGDKN DGLGLSLSLG YATQRNHHQQ PSLKLNLMPL  60
ASQNKHKKTS WTDLFQSPDR TCDTRLFQRG IDMNRVPAAV ADCDDETGVS SPNSTLSSLI  120
SGKRSEREQI GEETEAERAS CSRGSDDEDG GDASRKKLRL SKEQSSVLEE NFKEHNTLNP  180
KEKLALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KTCCENLTEE NRRLLKEVQE  240
LRALKLSPQL YMHMNPPTTL TMCPSCKRVV SSASSSSAAV VSSALAPIAS TPQPQRPVPI  300
NPWAAMPIHH RTFDAPASSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159SRKKLRL
2203211RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G136400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450828.10.0homeobox-leucine zipper protein HAT3 isoform X2
SwissprotP466021e-104HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLB9GP510.0B9GP51_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.16e-97homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]