PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G113400.1
Common NamePOPTR_0002s11410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 270aa    MW: 30070 Da    PI: 6.5109
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G113400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-19124178256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq  +Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Potri.002G113400.1 124 RKKLRLTKEQSVILEDNFKDHSTLNPKQKQVLAEQLNLRPRQVEVWFQNRRARSK 178
                         78889************************************************98 PP
2HD-ZIP_I/II119.22.1e-38124212190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl+keq+ +LE++F+ +++L+p++K+ la++L+l+prqv+vWFqnrRAR k+kq+E+d+e Lk+++++l+ en+rL+ke +eL+ +
  Potri.002G113400.1 124 RKKLRLTKEQSVILEDNFKDHSTLNPKQKQVLAEQLNLRPRQVEVWFQNRRARSKLKQTEVDCELLKKCCETLTLENKRLQKELQELK-S 212
                         69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.892120180IPR001356Homeobox domain
SuperFamilySSF466893.25E-18122188IPR009057Homeodomain-like
SMARTSM003891.1E-16122184IPR001356Homeobox domain
CDDcd000863.59E-16123181No hitNo description
Gene3DG3DSA:1.10.10.602.0E-17124178IPR009057Homeodomain-like
PfamPF000462.4E-16124178IPR001356Homeobox domain
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
SMARTSM003406.9E-21180223IPR003106Leucine zipper, homeobox-associated
PfamPF021833.0E-8180213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMGFGTTDDL CNTGLGLGLG SFHAEQENCS QSDHLFQPIK KDKLTLKYDL LLPSLTLGPS  60
EEVYRSITKK TDADLQPQAS SLSAVSSFSN SSIKKEREFG IGEEVDVERI SSRLSDEDEE  120
GSPRKKLRLT KEQSVILEDN FKDHSTLNPK QKQVLAEQLN LRPRQVEVWF QNRRARSKLK  180
QTEVDCELLK KCCETLTLEN KRLQKELQEL KSLKLASPVY MQLPAATLSM CPSCERICSG  240
SDQGSSTSTF TVGPKPNFYN PDTHSSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172180RRARSKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.134920.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G113400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302378.10.0homeobox-leucine zipper protein HAT22
SwissprotP466045e-85HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLB9GNK20.0B9GNK2_POPTR; HD-ZIP family protein
STRINGPOPTR_0002s11410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-68HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]