PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G404100.1
Common NamePOPTR_0001s41460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 344aa    MW: 38643.6 Da    PI: 8.3137
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G404100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.69.9e-53141391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+v+yL++kv+g+++++ ++i e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk 
  Potri.001G404100.1  14 LPPGFRFHPTDEELLVQYLCRKVAGHHFSM-QIIGEIDLYKFDPWLLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKI 103
                         79****************************.89***************7777799***********************************9 PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Potri.001G404100.1 104 ITS-DGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139
                         999.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-679162IPR003441NAC domain
PROSITE profilePS5100560.68314162IPR003441NAC domain
PfamPF023651.3E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGVQETDPLA QLSLPPGFRF HPTDEELLVQ YLCRKVAGHH FSMQIIGEID LYKFDPWLLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITSDGRK VGIKKALVFY  120
IGKAPKGTKT NWIMHEYRLI ESSRKHGSTK LDEWVLCRIY KKKSIAAQKS MSGVSSKEPS  180
TNSPSSSFSS HFDDDVLDPL PEIDDRFLDL PRTNSLKPRH HEEKINLATL GSGSFDWATL  240
AGLNSVPQLV QTQPCVSYSN SNVHDVYVPS MSQLCHMDTS AERMENLVEE EVQSGVRTRL  300
DSVGNPVFFQ QNSSVRPQSF SNSFDPYGLR HSIQPGSGFG FNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-10811697174NAC domain-containing protein 19
3swm_B1e-10811697174NAC domain-containing protein 19
3swm_C1e-10811697174NAC domain-containing protein 19
3swm_D1e-10811697174NAC domain-containing protein 19
3swp_A1e-10811697174NAC domain-containing protein 19
3swp_B1e-10811697174NAC domain-containing protein 19
3swp_C1e-10811697174NAC domain-containing protein 19
3swp_D1e-10811697174NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G404100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006370304.20.0NAC domain-containing protein 72
SwissprotA0A3Q7HH641e-141JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A2K2CBE40.0A0A2K2CBE4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s41460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-130NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]