PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G151700.1
Common NamePOPTR_0001s15170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 553aa    MW: 61305.9 Da    PI: 7.3486
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G151700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.31.2e-141549135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Potri.001G151700.1 15 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 49
                        99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-11853No hitNo description
SMARTSM004011.1E-8961IPR000679Zinc finger, GATA-type
CDDcd002021.48E-151462No hitNo description
PROSITE profilePS5011411.21548IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401540IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-111549IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-121549IPR000679Zinc finger, GATA-type
PfamPF139191.2E-11291384IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MVMKKERDMG KQGPCCHCGV TSTPLWRNGP PEKPVLCNAC GSRWRTKGTL ANYTPLHARA  60
GPDDYEDHRV SRLKSISMNK NREVKLLKRK PNYDHRVAEG VALDYNEGYR KVVDEDTSNR  120
SSSGSAISNS ESCAQFGSAD ASDLTGPAQS VVWDSLVPSR KRTCVNRPKP SPVEKLTKDL  180
YTILHEQQSS CFSGSSEEDL LFDNETPMVS VEIGHGSVLI RHPSSIARDE ESEASSLSVE  240
NKQYSTNEAY SHPVILPVHN ENQSVNMTYP VTVKTKNLSG QGMQQEQLNR DKSPHEKVHI  300
LGSHNSPLCS VDLNDILNFE EFARHLTNEE QQQLLKYLPP LDTAKLPNSI KSMFDSPQFK  360
ENINCYQQLL SEGVFDLSLE AKSEDCKTLK RLTLSNLSKS KWVERYHLLK KCKNSTGKSL  420
VGKGPNPNVV ASSNLIGAKR SRDNLSQKFS EAKSMKSPKR IVMKATYEIK ELIDNDGSCF  480
SPRSLFALPP DGSSLMLDSL HFVDESSDQD LLLDIPSNGS FAQAELLYPT NNSFGQQAST  540
SSSSIYPHLG CP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G151700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470260.0EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368951.10.0GATA transcription factor 26
SwissprotQ8W4H11e-166GAT26_ARATH; GATA transcription factor 26
TrEMBLU5GPN90.0U5GPN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-168GATA transcription factor 26