PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G087900.1

Common Name

POPTR_0001s10970g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 956aa MW: 105379 Da PI: 5.8884

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G087900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.7e-29	552	603	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek isle+l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Potri.001G087900.1 552 AEKMISLEVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 603 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.757	538	623	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-26	556	603	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-21	852	943	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.0E-25	859	940	No hit	No description
PROSITE profile	PS51745	20.353	859	941	IPR000270	PB1 domain
SMART	SM00666	1.4E-23	859	941	IPR000270	PB1 domain
CDD	cd06407	3.51E-34	860	940	No hit	No description
Pfam	PF00564	4.0E-16	860	940	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MELDLDLDSS WPLDQISFIS SNPMSTFLIS SSNEQPCSPL WAFSDAADDR LLAAAAGGGN 60 PNSVTESKGE NDDNSKLPSP FLGLMPIDNP DGYCIIKERM TRALRHFKES TEQHILAQVW 120 APVKNGGRYA LTTSGQPFVI DPHSNGLHQY RMVSLMYKFS VDGESDGELG LPGRVFRQKL 180 PEWTPNVQYY SSKEYSRLDH ALHYNVRGTV ALPVFEPSGQ SCVGVVELIM TSQKINYAPE 240 VDKVCKALEA VDLKSSEILD PPSTQICNEG RQNALAEILE ILTMVCETHK LPLAQTWVPC 300 MHRSVLAYGG GLKKSCTSFD GSCNGQVCMS TTDVAFYVVD AHMWGFREAC LEHHLQKGQG 360 VAGRAFFSHN LCFCPDITQF CKTEYPLVHY ARMFGLTSCF AICLRSSYTG DDDYILEFFL 420 PPSFTDSREW KTLLGSILAI MKQDFQSLQV ASGMDLEEEE GFVEMIQVST NGRLDLRLEC 480 IQIPQSTKSP PDDNALLNGP IVQIYPEKKQ LMLDLDVIKN GGSAVQADVR QTHASLTEKE 540 TKKPKERKRG KAEKMISLEV LQQYFTGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI 600 KKVNRSLSKL KRVIESVQGT EGAFSTSSLP VAVGTISWPP NLNGRNQQNS PNSKSPEHHG 660 DKNGSPTCRT PGSDVKAGFE DQLLGCRKLS LEELTVQNRF SPELGTGSNR SKTRGGSRGE 720 SAGTPTSHGS CQGCPENESA PAKDPSVSPV HERCIKAGGS PELVLQQTRE LNLSAAYSIP 780 DAFFATEAQE QFGGMLIEDT GSSKDLSNLC PAMADAIVDE RFPESKWTDP PSSDINPTQM 840 IAALSIAMPH VTSRQEMNSV TIKATYREDM IRFRISLSSG IAKLKEEVAK RLRLEVGTFD 900 IKYLDDDHEW ILIARDADLH ECMDVSRSSN SNMIRVSVHD ANANLGSSCE STWEI*

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MELDLDLDSS WPLDQISFIS SNPMSTFLIS SSNEQPCSPL WAFSDAADDR LLAAAAGGGN  60
PNSVTESKGE NDDNSKLPSP FLGLMPIDNP DGYCIIKERM TRALRHFKES TEQHILAQVW  120
APVKNGGRYA LTTSGQPFVI DPHSNGLHQY RMVSLMYKFS VDGESDGELG LPGRVFRQKL  180
PEWTPNVQYY SSKEYSRLDH ALHYNVRGTV ALPVFEPSGQ SCVGVVELIM TSQKINYAPE  240
VDKVCKALEA VDLKSSEILD PPSTQICNEG RQNALAEILE ILTMVCETHK LPLAQTWVPC  300
MHRSVLAYGG GLKKSCTSFD GSCNGQVCMS TTDVAFYVVD AHMWGFREAC LEHHLQKGQG  360
VAGRAFFSHN LCFCPDITQF CKTEYPLVHY ARMFGLTSCF AICLRSSYTG DDDYILEFFL  420
PPSFTDSREW KTLLGSILAI MKQDFQSLQV ASGMDLEEEE GFVEMIQVST NGRLDLRLEC  480
IQIPQSTKSP PDDNALLNGP IVQIYPEKKQ LMLDLDVIKN GGSAVQADVR QTHASLTEKE  540
TKKPKERKRG KAEKMISLEV LQQYFTGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI  600
KKVNRSLSKL KRVIESVQGT EGAFSTSSLP VAVGTISWPP NLNGRNQQNS PNSKSPEHHG  660
DKNGSPTCRT PGSDVKAGFE DQLLGCRKLS LEELTVQNRF SPELGTGSNR SKTRGGSRGE  720
SAGTPTSHGS CQGCPENESA PAKDPSVSPV HERCIKAGGS PELVLQQTRE LNLSAAYSIP  780
DAFFATEAQE QFGGMLIEDT GSSKDLSNLC PAMADAIVDE RFPESKWTDP PSSDINPTQM  840
IAALSIAMPH VTSRQEMNSV TIKATYREDM IRFRISLSSG IAKLKEEVAK RLRLEVGTFD  900
IKYLDDDHEW ILIARDADLH ECMDVSRSSN SNMIRVSVHD ANANLGSSCE STWEI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G087900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024449512.1	0.0	protein NLP7 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2K2BUQ7	0.0	A0A2K2BUQ7_POPTR; Uncharacterized protein
STRING	POPTR_0001s10970.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Potri.001G087900.1
Entrez Gene	7477839

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]