PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G057800.1
Common NamePOPTR_0001s13700g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 999aa    MW: 111419 Da    PI: 5.4233
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G057800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.38.3e-55131273116
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwlk+ e++ iL+n++k+++t++++++p+sgsl+L+n++++++fr+DG++w+kkkdg++v E+he+LKvg+ve+l+cyYah+e+n+
  Potri.001G057800.1  13 EEaQTRWLKPAEVIFILQNHDKYQFTEKPPQKPTSGSLFLFNKRVLKFFRRDGHNWRKKKDGRSVGEAHERLKVGNVEALNCYYAHGEQNQ 103
                         55599************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhyle 116
                         +fqrr+yw+L++++e+ivlvhy++
  Potri.001G057800.1 104 NFQRRSYWMLDQAFEHIVLVHYRD 127
                         **********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.4938134IPR005559CG-1 DNA-binding domain
SMARTSM010766.4E-7411129IPR005559CG-1 DNA-binding domain
PfamPF038596.0E-4814127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.9E-9413504IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.68E-19419503IPR014756Immunoglobulin E-set
PfamPF018334.6E-9419502IPR002909IPT domain
CDDcd001023.94E-7419503No hitNo description
Gene3DG3DSA:1.25.40.201.2E-14615709IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.494617709IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.26E-15620711IPR020683Ankyrin repeat-containing domain
CDDcd002043.42E-13637709No hitNo description
PfamPF127961.3E-6638710IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0081650679IPR002110Ankyrin repeat
PROSITE profilePS5008810.98650682IPR002110Ankyrin repeat
SMARTSM002483400689718IPR002110Ankyrin repeat
SMARTSM0001517767789IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.352771797IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.79E-7775790IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.33822844IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078823852IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.79E-7823874IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0047825843IPR000048IQ motif, EF-hand binding site
SMARTSM000158.0E-4845867IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.773846870IPR000048IQ motif, EF-hand binding site
PfamPF006125.0E-4848867IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MLQSGYDINS LFEEAQTRWL KPAEVIFILQ NHDKYQFTEK PPQKPTSGSL FLFNKRVLKF  60
FRRDGHNWRK KKDGRSVGEA HERLKVGNVE ALNCYYAHGE QNQNFQRRSY WMLDQAFEHI  120
VLVHYRDITE GKPSPGSAAQ LSPIFSYSPG TNTSQTQGST SAISSVYEPY QSFSSPASVD  180
VSSGLGIKDN EVGRTAEFTS SANKEVTQFF RRLEEQLSLN EDSAEEIGPF GAEEGAINDT  240
KILEYVNNIS KEDQSKNLLH GSLYIVDYQS YGGLAGNQLE RNNLAPLQDA GDSGAYQQPY  300
SHYYTDGSEE PLPWNEGIES YKTSSGIEYQ EKTKSSLSTE PAQEQENSYW INFNEPNVRN  360
SSLLLPQEVE NFELPAYSSV IETHENNSNF YAMLYDQDHL GIPNEADSNL TVAQQQKFTI  420
HEISPEWGYA TEATKVIIVG SFLCDPSESS WMCMFGDIEV PLQIIQEGVI RCECPPHHPG  480
KVTLCITSGN RESCSEIRGF EYRAKDSSCA HCILSQTEAT KSPDELLLLF RFVQMLLSDY  540
SLQRGDSVEM GIHLLRELKA DDDTWGDIIE ALLVGSGTSS MTVDWLLQQL LNDKLQQWLS  600
SKSQEGHDQP GCSFSKKEQG IIHMVAGLGF EWALSPILSH GVSINFRDIN GWTALHWAAH  660
FGREKMVASL LASGASAGAV TDPSPQDPIG KTPASIAATS GHMGLAGYLS EVALTSHLSS  720
LRLEESQLSI GSAEVQAERT LDSISKESFA ATEDQILLKD TLAAARNAAL AAARIQSAFR  780
AHSFRKRLQR EATSLDEYGI CAGEIQGLSS MSKLAFRNNS HVINSAALSI QKKYRGWKSR  840
RDFLALRQKV VKIQAHVRGY QIRRNYKIIC WAVGILDKAV LRWRRKGIGL RGFRNVMESI  900
DESEDEDILK IFRKQKVDGA INEAVSRVLS MVKSPDARQQ YHRTLKQYRQ AKAELGGTSE  960
PAASTSLADA TEMENDLVPF QVEATSDVLY LPMFTLVD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G057800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368871.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLU5GPG60.0U5GPG6_POPTR; CAMTA family protein
STRINGPOPTR_0001s13700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]