PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta006477 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | TCP | ||||||||
Protein Properties | Length: 503aa MW: 55054.5 Da PI: 9.4167 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.3 | 1.4e-30 | 58 | 179 | 2 | 121 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsssg 88 +g+kdrhsk+ T++g+RdRRvRls+++a++++dLqd+LG+ ++sk++ WL+++ak ai++l+ + + +s+ + Pta006477 58 TGGKDRHSKVLTAKGLRDRRVRLSVPTAIQLYDLQDRLGYEQPSKAVGWLINAAKSAIDDLPVLdpemdsaasvdnvA-----------QLNSS-----N 141 689*************************************************************55333222222221...........11111.....1 PP TCP 89 ...............................kaaksaakskksqksaasalnlakesrakarar 121 + kar r Pta006477 142 csnvdhsagspresgtaitasafmgfrvgndS--------------------------VKARGR 179 11221111122222333444444444443320..........................233333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.8E-27 | 59 | 239 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.95 | 60 | 118 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MEMQKKDLAS FSETMNKGRL QEDCDKMQVN GKGSKRKAWM MEGMVEQEWK IVSVSRLTGG 60 KDRHSKVLTA KGLRDRRVRL SVPTAIQLYD LQDRLGYEQP SKAVGWLINA AKSAIDDLPV 120 LDPEMDSAAS VDNVAQLNSS NCSNVDHSAG SPRESGTAIT ASAFMGFRVG NDSVKARGRK 180 SQKDINGKLV PITTQKGSDL ARTSSSISDG SIKGSAEHTS NCSISESTSR IESRLKESEL 240 ATKKSVSSSR SPPAIQQMNS MQHFLTSGML KSVFPNTPLP SESKSSKNDN PCGIHTQILS 300 GTSNVQQVWD YNNRLSYTDM LCSHGSHPLQ NLSSSSTAPV QKYFPPVPSS PGSQIGRNSC 360 LQSHEMPESS ISFIDPKQTR PFGGSAEPQG HGQDNLFSNM IMKRVEQVHQ QQQQQEAQMR 420 IKHYASTSVP RFSNDINLLT SSLSARELHQ AISSSITNMP SLSHTNKNVY GEVSANVARD 480 FAPSQDYEAR VIPGFHYAGQ HKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.34694 | 0.0 | root |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 3e-33 | TCP family protein |