PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta006477

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

TCP

Protein Properties

Length: 503aa MW: 55054.5 Da PI: 9.4167

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-49553	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.3	1.4e-30	58	179	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsssg 88 +g+kdrhsk+ T++g+RdRRvRls+++a++++dLqd+LG+ ++sk++ WL+++ak ai++l+ + + +s+ + Pta006477 58 TGGKDRHSKVLTAKGLRDRRVRLSVPTAIQLYDLQDRLGYEQPSKAVGWLINAAKSAIDDLPVLdpemdsaasvdnvA-----------QLNSS-----N 141 689*************************************************************55333222222221...........11111.....1 PP TCP 89 ...............................kaaksaakskksqksaasalnlakesrakarar 121 + kar r Pta006477 142 csnvdhsagspresgtaitasafmgfrvgndS--------------------------VKARGR 179 11221111122222333444444444443320..........................233333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.8E-27	59	239	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.95	60	118	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MEMQKKDLAS FSETMNKGRL QEDCDKMQVN GKGSKRKAWM MEGMVEQEWK IVSVSRLTGG 60 KDRHSKVLTA KGLRDRRVRL SVPTAIQLYD LQDRLGYEQP SKAVGWLINA AKSAIDDLPV 120 LDPEMDSAAS VDNVAQLNSS NCSNVDHSAG SPRESGTAIT ASAFMGFRVG NDSVKARGRK 180 SQKDINGKLV PITTQKGSDL ARTSSSISDG SIKGSAEHTS NCSISESTSR IESRLKESEL 240 ATKKSVSSSR SPPAIQQMNS MQHFLTSGML KSVFPNTPLP SESKSSKNDN PCGIHTQILS 300 GTSNVQQVWD YNNRLSYTDM LCSHGSHPLQ NLSSSSTAPV QKYFPPVPSS PGSQIGRNSC 360 LQSHEMPESS ISFIDPKQTR PFGGSAEPQG HGQDNLFSNM IMKRVEQVHQ QQQQQEAQMR 420 IKHYASTSVP RFSNDINLLT SSLSARELHQ AISSSITNMP SLSHTNKNVY GEVSANVARD 480 FAPSQDYEAR VIPGFHYAGQ HKS

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MEMQKKDLAS FSETMNKGRL QEDCDKMQVN GKGSKRKAWM MEGMVEQEWK IVSVSRLTGG  60
KDRHSKVLTA KGLRDRRVRL SVPTAIQLYD LQDRLGYEQP SKAVGWLINA AKSAIDDLPV  120
LDPEMDSAAS VDNVAQLNSS NCSNVDHSAG SPRESGTAIT ASAFMGFRVG NDSVKARGRK  180
SQKDINGKLV PITTQKGSDL ARTSSSISDG SIKGSAEHTS NCSISESTSR IESRLKESEL  240
ATKKSVSSSR SPPAIQQMNS MQHFLTSGML KSVFPNTPLP SESKSSKNDN PCGIHTQILS  300
GTSNVQQVWD YNNRLSYTDM LCSHGSHPLQ NLSSSSTAPV QKYFPPVPSS PGSQIGRNSC  360
LQSHEMPESS ISFIDPKQTR PFGGSAEPQG HGQDNLFSNM IMKRVEQVHQ QQQQQEAQMR  420
IKHYASTSVP RFSNDINLLT SSLSARELHQ AISSSITNMP SLSHTNKNVY GEVSANVARD  480
FAPSQDYEAR VIPGFHYAGQ HKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-20	65	119	1	55	Putative transcription factor PCF6
5zkt_B	3e-20	65	119	1	55	Putative transcription factor PCF6

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.34694	0.0	root

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	3e-33	TCP family protein