PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006396

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TCP

Protein Properties

Length: 512aa MW: 53498.2 Da PI: 7.5896

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50823322	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.1	2.2e-40	75	171	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..........k 89 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ ++s + s+s s++ + Psi006396 75 AAKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRGSSS--SISaglkqqsyhhH 171 89*******************************************************************88864444444444..22222322222231 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-38	80	182	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.078	81	135	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MIGYVNPAAT KEQKGSNLDS AGSFTQALVM SSGVVGMGSN QGDETNNVEG SNMVVAARTS 60 QGESGSVVDP NKKPAAKRSS TKDRHTKVDG RGRRIRMPAT CAARVFQLTR ELGHKSDGET 120 IEWLLQQAEP SIIAATGTGT IPANFSTLNV SLRGSSSSIS AGLKQQSYHH HHQRALAGLT 180 GGLGAPAGGD SLGHQYRMRM GEWERAEEDT KTHAGAEMGS THGGSAALMG GGFHLQHQHQ 240 QEPNLMNEMG ESGAEECFGR KRFREDLFKE SDQEAAAKPL RSVVQRQSEM MSSPAGIGMG 300 MSMSMPAAAM WAVAPAPPGM SNSGHGGFWM LQPVSAGSNS NPPPLMAAGP QSEPIWTFPP 360 TGSTGYRMPA GTSIQLGATG SGSSLPRSNN NGNNNNNGNQ SRISSSTGLP FMPRMNLPMV 420 GSCHEVSGSG STRLGSGAVP FSSMLLQQGS STGSIGGAPT ESHLGMLAAL NAYTNRSMSS 480 EHQSLQESVN QQAGVDRSGE DGHSHQNHAN SQ

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MIGYVNPAAT KEQKGSNLDS AGSFTQALVM SSGVVGMGSN QGDETNNVEG SNMVVAARTS  60
QGESGSVVDP NKKPAAKRSS TKDRHTKVDG RGRRIRMPAT CAARVFQLTR ELGHKSDGET  120
IEWLLQQAEP SIIAATGTGT IPANFSTLNV SLRGSSSSIS AGLKQQSYHH HHQRALAGLT  180
GGLGAPAGGD SLGHQYRMRM GEWERAEEDT KTHAGAEMGS THGGSAALMG GGFHLQHQHQ  240
QEPNLMNEMG ESGAEECFGR KRFREDLFKE SDQEAAAKPL RSVVQRQSEM MSSPAGIGMG  300
MSMSMPAAAM WAVAPAPPGM SNSGHGGFWM LQPVSAGSNS NPPPLMAAGP QSEPIWTFPP  360
TGSTGYRMPA GTSIQLGATG SGSSLPRSNN NGNNNNNGNQ SRISSSTGLP FMPRMNLPMV  420
GSCHEVSGSG STRLGSGAVP FSSMLLQQGS STGSIGGAPT ESHLGMLAAL NAYTNRSMSS  480
EHQSLQESVN QQAGVDRSGE DGHSHQNHAN SQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	C0PR43	0.0	C0PR43_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	9e-42	TCP family protein