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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_86.g455.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | HB-other | ||||||||
Protein Properties | Length: 1251aa MW: 140375 Da PI: 5.1421 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51 | 2.5e-16 | 5 | 60 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rk t+ t+eql++Lee F ++++p+ +++++LA+++gLt +qV vWF rR k+k+ model.Picochlorum_contig_86.g455.t1 5 RKVTKKTPEQLKILEEGFSRDKNPDDAAKADLASRTGLTVDQVIVWFSHRRRKDKR 60 566899************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.273 | 1 | 61 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-18 | 3 | 65 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.94E-15 | 4 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 5 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.36E-15 | 5 | 62 | No hit | No description |
Pfam | PF00046 | 1.0E-13 | 5 | 60 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 36 | 59 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50827 | 10.447 | 328 | 388 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.2E-7 | 332 | 382 | IPR018501 | DDT domain |
Pfam | PF05066 | 7.7E-12 | 493 | 560 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 0.0012 | 640 | 679 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 2.8E-9 | 805 | 880 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1251 aa Download sequence Send to blast |
MQEARKVTKK TPEQLKILEE GFSRDKNPDD AAKADLASRT GLTVDQVIVW FSHRRRKDKR 60 EQQVQALWQM GNEEGYDDID VDELSESDKQ AFHEMKQIME IAKGRLESYR EDGPPLGLYF 120 DDIPTIPIHA AKGGTGAVER AWKAKQELNR LEASIRKEQE RLVREKEKND TRMAKAREKE 180 LVRLENERRK QLERTRREAK KEEERRLKEQ TRIMNLQLKE KRRLEAAKEK EMKRLKKLRE 240 REEKKKEKEM IKALSKQEKE ALRTRSAHTS QKDDLDIEWE ELVQKYKSAN DISNGVDFAE 300 GETPGLVRPE FPPAGVDMVD LGPKGVGESF QGTLLSSWTF LSSFSEILAL DCPSVDLLLQ 360 SLIDGYASKD LADIHIALLR LIQVDAEEGN AVEYNANAKG EGHAAGSLFV GPRLLEEAWA 420 WGFDVESWRA HLNEVTWPEV CRQMCISAGF GRRRPARKAK KGKDGAGKPG EDLVVGENGK 480 LELQLPPRLS ESSVKGACWM VLKDAGYQGL RVEEIAKRIQ KMGLRDLRTS RTPETSVAGA 540 MGRDVLFERI APATYALESF RSRYADLIGQ KKGGNETSKD NEDQSAVDED VSMKDAEEEN 600 QEENLSAEAE DIDEDDVDED DDDMEEDQDN LAEQNTESRE GEPWLAKLKE SSYDSLSLDE 660 KSALLSTLCQ LALDSTTARL VINARQEEQM CIKRSKIEDD KLESSLLKHR KQLEQIVNAR 720 KNALKAEEEL RKIDPAQESN PQAEASGSAF EKSKAEIDLE AKVALAEKKI MGYIGQKNSI 780 TNEMLKERAR KRAEEALKEL SLNSVRFEPL GCDRRYNRYY RFCSDEKRAV PGSTKGRIYF 840 ENPQTGQLKA IVSEQALQEL MRSLNPKGPR ERELKASLVR IEDDVISNMP SSSWNELSDV 900 ASTRVMLSCV DLCPCAHSII GSLAGSQAKD DIVLKVREAI DTICKALEET QLKSDFNKED 960 FVSKLQKSES LGDIKQCLGD LEASILPEYV HSGFPLEPLL VRGAWISIGA EVATALPGST 1020 IADVMLPMSP DPKTGAPPKA ETQDGRDALA KRVPLSWLPE TPASMALRVL ALDTALRYRR 1080 DECGRETMTE FQFSLRPYRS RGSKNGLVES MSVRDYGRVD PTHFAKFPYR LLFGPRIDFE 1140 ISKEELLSDI QKESDEPLSS VLYKRQPIGT GRGRGRGRGR GSRRVSAGRG EGIKQQNTEE 1200 KLGAHEVKDE ADDVAPGTAN GQTPEEAQGH TPLDSSNSLR SPASSSDFVA * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 58 | RRRKDK |
2 | 53 | 60 | RRRKDKRE |
3 | 1171 | 1180 | RGRGRGRGRG |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5105 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 8e-31 | homeobox-1 |