PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_16.g98.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family HSF
Protein Properties Length: 443aa    MW: 49396.7 Da    PI: 4.9412
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_16.g98.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.61.5e-31461382103
                                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXT CS
                        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskske 76 
                                         Fl k+ye+++++ ++ ++sw ++g sf+v+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++       
  model.Picochlorum_contig_16.g98.t1  46 FLVKTYELVDEPLTDPIVSWGAEGLSFIVWKPAEFARDLLPLHFKHNNFSSFVRQLNTYGFRKVDPDR------- 113
                                         9****************************************************************999....... PP

                                         TSEEEEESXXXXXXXXXXXXXXXXXXX CS
                        HSF_DNA-bind  77 kiweFkhksFkkgkkellekikrkkse 103
                                           weF++++F ++++++l  i+rkk++
  model.Picochlorum_contig_16.g98.t1 114 --WEFANEHFLRDRRDQLVFIQRKKKN 138
                                         ..**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.4E-3636129IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-3241135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-5542135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-184669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-2746135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-1897109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGVTTRLKSA PRQQSSFTGI DSVGDEEKST AGDKSKKQSS NQPPPFLVKT YELVDEPLTD  60
PIVSWGAEGL SFIVWKPAEF ARDLLPLHFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEH  120
FLRDRRDQLV FIQRKKKNAS DKSQKYGMSV DGEVGTPYAA LEVGAYGGLQ AEVDALKRDR  180
TLLMQEVIRL RKSQQSSEGE IRALSKKVDV SEKRQQQMIA FFAQALQNPS LVQHYIASSP  240
SIKRLEDGTS RRRKRTKKSA NAGMYTGNES GSDDGGYTGG GEMVVHQGKQ RDGNQLFSEL  300
SKAFTKMLTT GEDDNDDLDH DVPGSTNNIH ALLDNGQANM KGPRVEEASD SFGQQREFGD  360
SIYNPSPAFV TEPEGFANYN DGANGLPEWQ EPHSDDLIAP DSLPSLNLED LDLDKIPDML  420
PPHDTLDLTE SELEKFGQQW EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-194414018125Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396796.16e-80Heat stress transcription factor A-1d
TrEMBLA0A2P6TI561e-87A0A2P6TI56_CHLSO; Heat shock factor HSF8-like
STRINGA0A087SDW42e-79(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.16e-69heat shock transcription factor A1D