PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.8G201900.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 300aa MW: 34129.4 Da PI: 7.9817

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.8G201900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58	2.6e-18	32	119	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ ++i+a++e++ +lrrg lk +Weev+ + ++ +++++qC++k+e+l++r++ +k++ + + s+s++p+f+ +e Prupe.8G201900.1.p 32 WTHEETVQMIRAYQEKWYKLRRGPLKSSQWEEVAVTVaarcgyEHAEQSKTATQCRHKMEKLRQRHRTLKKRLRPG---SRSRWPFFELME 119 **********************************99888987778899********************86...6778***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.9E-18	31	121	No hit	No description
PROSITE profile	PS50090	6.226	31	94	IPR017877	Myb-like domain
SMART	SM00595	0.0026	39	126	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSTPPPPSPT ASASASVPAS PVSTKKAQPL PWTHEETVQM IRAYQEKWYK LRRGPLKSSQ 60 WEEVAVTVAA RCGYEHAEQS KTATQCRHKM EKLRQRHRTL KKRLRPGSRS RWPFFELMES 120 LERGPMPISS RPMAVMPCQP EEEEEEEEQR HDRHGVDVDG EDDDEENSSK VRSIDYILRR 180 PTIVNRFSGG QASFWQDTAA AKRSRDAVDG GGGYNGYVVE PPQMGGEMAV ELADEIRAFA 240 KRFIGVENTR MEFMKETERR RLEMEKRRID MILQSQQKIV DSIDKAFGSS TNNCPSQLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	104	RHRTLKKRLR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.8G201900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020425150.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A251N0M0	0.0	A0A251N0M0_PRUPE; Uncharacterized protein
STRING	EMJ02528	1e-155	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-53	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Prupe.8G201900.1.p