PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G125000.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 992aa MW: 108973 Da PI: 5.1872

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G125000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	591	642	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCR++GI+RWP+Rkik++ Prupe.5G125000.1.p 591 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRHHGISRWPSRKIKKV 642 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.587	581	662	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-25	595	642	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.19E-22	894	983	No hit	No description
SMART	SM00666	2.3E-26	898	980	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.3E-25	898	979	No hit	No description
PROSITE profile	PS51745	24.555	898	980	IPR000270	PB1 domain
Pfam	PF00564	1.1E-21	899	979	IPR000270	PB1 domain
CDD	cd06407	4.05E-36	899	979	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MVEPEEESQT QAIPPKSKNI VDDREAALME FDLDLDAFWP LDPIHFPSNP TSPPLFSSTD 60 QPCSPLWGFP DGDADNDDKL AGQVDQALSD RPQFSSCIPD PEREIPRENE DRRILTSPFL 120 GLEPVENPNA YCLIKEKITQ ALRQLKELTD QHVLAQVWAP VKNGGRYVLT TSGQPFVLDP 180 HTNGLHQYRM ASLMYMFSVD GESDGMLGLP GRVFQQKLPE WTPNVQYYSI KEYPRLGHAQ 240 HYNVQGTLAL PVFEPSGRSC VGVLELIMTS PKINYASEVD KVCKALEAVS LKSSEILDHT 300 SMQIQICNEG RQTALTEILE ILTVVCETHK LPLAQTWVPC MHRNVLAYGG GLKKSCTSFD 360 GSCMARVCMS TTDAAFYIVD APMWHFRDAC VEHHLQKGQG VAGRAFLSRN ACFCRDITQF 420 CKTDYPLVHY ARMFKLTSCF AICLQSTHTG NDDYILEFFL PPSITDSYEQ QTLLGSLLAI 480 IKNHFQSLKV ASGIILEEEG LVEMVQASTN KGLDSRLECI RISRSSETPP GPALPNGEEM 540 VQLDSSKPQL MVDFDPANDG SNAVNEGGEN NISCPENKDI KKKSEKKRGK AEKSISLEVL 600 QQYFAGSLKD AAKSLGVCPT TMKRICRHHG ISRWPSRKIK KVNHSLSKLQ RVIESVQGAE 660 GAFGLTSLTA SPRSGAVGSI SRPYILNGSN QQSSPSSKPS ELLGEKKDSP TPTTPGKEGQ 720 AWIDNQLLDG GILSQEELLL EHGRFLLDDG KGSNTSKTGS SSREASAGTP TSHGSCQGSP 780 ANGNALVNNP FVPSIHDQCI KVNGFPESAV RPPKEPNLLV ACSIPDAVLM TDPEEPCRGM 840 LIEDAGSSKD LKNLCPQVDA MVDEQVPEAA CTNPPCSDSA LNPSNTMPQI IARQEMKSVT 900 IKATYKEDII RFRISMSSGI VELKDEVAKR LKLEMGTFDI KYMDDDLEWV LVACDADLQE 960 CMEICRSLGR KMIRLSVHDI MPNFGSSCGS M*

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MVEPEEESQT QAIPPKSKNI VDDREAALME FDLDLDAFWP LDPIHFPSNP TSPPLFSSTD  60
QPCSPLWGFP DGDADNDDKL AGQVDQALSD RPQFSSCIPD PEREIPRENE DRRILTSPFL  120
GLEPVENPNA YCLIKEKITQ ALRQLKELTD QHVLAQVWAP VKNGGRYVLT TSGQPFVLDP  180
HTNGLHQYRM ASLMYMFSVD GESDGMLGLP GRVFQQKLPE WTPNVQYYSI KEYPRLGHAQ  240
HYNVQGTLAL PVFEPSGRSC VGVLELIMTS PKINYASEVD KVCKALEAVS LKSSEILDHT  300
SMQIQICNEG RQTALTEILE ILTVVCETHK LPLAQTWVPC MHRNVLAYGG GLKKSCTSFD  360
GSCMARVCMS TTDAAFYIVD APMWHFRDAC VEHHLQKGQG VAGRAFLSRN ACFCRDITQF  420
CKTDYPLVHY ARMFKLTSCF AICLQSTHTG NDDYILEFFL PPSITDSYEQ QTLLGSLLAI  480
IKNHFQSLKV ASGIILEEEG LVEMVQASTN KGLDSRLECI RISRSSETPP GPALPNGEEM  540
VQLDSSKPQL MVDFDPANDG SNAVNEGGEN NISCPENKDI KKKSEKKRGK AEKSISLEVL  600
QQYFAGSLKD AAKSLGVCPT TMKRICRHHG ISRWPSRKIK KVNHSLSKLQ RVIESVQGAE  660
GAFGLTSLTA SPRSGAVGSI SRPYILNGSN QQSSPSSKPS ELLGEKKDSP TPTTPGKEGQ  720
AWIDNQLLDG GILSQEELLL EHGRFLLDDG KGSNTSKTGS SSREASAGTP TSHGSCQGSP  780
ANGNALVNNP FVPSIHDQCI KVNGFPESAV RPPKEPNLLV ACSIPDAVLM TDPEEPCRGM  840
LIEDAGSSKD LKNLCPQVDA MVDEQVPEAA CTNPPCSDSA LNPSNTMPQI IARQEMKSVT  900
IKATYKEDII RFRISMSSGI VELKDEVAKR LKLEMGTFDI KYMDDDLEWV LVACDADLQE  960
CMEICRSLGR KMIRLSVHDI MPNFGSSCGS M*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G125000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020419188.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A251P7F6	0.0	A0A251P7F6_PRUPE; Uncharacterized protein
STRING	XP_008239167.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G125000.1.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]