PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_7990V3.10.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 1001aa    MW: 108346 Da    PI: 8.2552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_7990V3.10.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.7e-16360458197
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpk +ae++   + ++e+  l+++d +gr W +++++  +++s++yvl+ G     ++ +L +gD+v+F++ +  
  Pp3c7_7990V3.10.p 360 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLRIQDVTGRDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLHAGDTVTFSRLE-A 449
                        89**************************555556778***************9989999999***9.********************765.5 PP

                        EE..EEEEE CS
                 B3  89 efelvvkvf 97 
                        +++lv++ +
  Pp3c7_7990V3.10.p 450 DGKLVMGYR 458
                        666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-26355460IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-18357459IPR015300DNA-binding pseudobarrel domain
CDDcd100174.39E-20358459No hitNo description
SMARTSM010191.4E-16360460IPR003340B3 DNA binding domain
PfamPF023621.8E-13360459IPR003340B3 DNA binding domain
PROSITE profilePS5086310.687360461IPR003340B3 DNA binding domain
PROSITE profilePS5105012.878594644IPR011124Zinc finger, CW-type
PfamPF074961.4E-9599641IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1001 aa     Download sequence    Send to blast
MAMGSTESRK VCWNSKCGTS SSTIWRPGWI TRSGRTAELC DYCGLAYQQS CFCETFHSDD  60
AGWRTCNFCK KRVHCGCVAS AYGIVLLDKG GVECIRCATA HDSAGSISLV GKHGQQLLAP  120
MTHLESGKVV DPAVRGWCEG FGAALAACQS DGGAWQPSSA ARTSLSPPTG LIRPWSAPET  180
DISMKSKDAA DSVSREHMTL EVVEYGGEGT EIDRNPCSDR TKAGGAAGGS GSGSSQVAGH  240
VIFHRFVSKA VVRHLILYNL KKMLISAADV KCPSLQLGKC FAHQAFVIFL HHHNNKYNMN  300
KSLLNIYFCF DFQGPLRVAR PPGEGRGRNQ LLPRYWPRIT DQELKQINSG DMQTTITPLF  360
EKMLSASDAG RIGRLVLPKA CAEAYFPPIH QPEGLPLRIQ DVTGRDWVFQ FRFWPNNNSR  420
MYVLEGVTPC IQSMKLHAGD TVTFSRLEAD GKLVMGYRKA PTSLSSQDAG ATRVGANSNT  480
GFSNPSSVVI QSADGWGSNV GGSKSKESGI SIGNLWSSQM DRKRGRPLGS KSKRLRLDSI  540
DSMLLKSNWE EAQELLRPAP SASSTVVTID GHEFEEYSEP PVLSKRTFIS NAPSGAQEQW  600
AQCDDCGTWR RVPVDAFVPA RWSCSQNTWD LTRAQCSAAQ EVSSDKLEVL LGPGPTSEGG  660
KQECAPKLTS TSKDENAPTT SAAAGLDALA QAASTSLSPA RTTKHPRHRP GCTCIVCIQP  720
PSGKGPKHKA SCICNVCLTV KRRFRTLMQR RKKRQCEREF EAFRNKREWH EEDTSDLVGV  780
VGRSGTADAA NIVDDNLSTA LIRSRDGGSE DGPLKGAIDL NIQPDHEERV SMVRLLQDAT  840
LPLSAYLHQQ RLSTLYVGDL VSDHVSNDAT SSQEDTPSES SSEAEADNGL EVAGHVRHEG  900
QRTQTSLGYV EQPNCLESWD ARGVKPAEFS GDSVLSSSSK LELNMMNNAA ATSAKKHVTG  960
AGRGRQICIG CGEQIGSAAK VCRRCGTCTA FGKKKRGVPL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-613374602124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1740752KRRFRTLMQRRKK
2740753KRRFRTLMQRRKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.60470.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380837.10.0B3 domain-containing protein Os07g0679700-like isoform X3
SwissprotQ0D5G41e-163Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2K1JVP00.0A0A2K1JVP0_PHYPA; Uncharacterized protein
STRINGPP1S42_132V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-155HSI2-like 1