PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_23050V3.16.p
Common NamePHYPADRAFT_74401
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 614aa    MW: 67853.3 Da    PI: 6.7678
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_23050V3.16.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.2e-14122222199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kv +  d  ++g +vlpk+ +eeh   ++k++++ +tl d  g++W+++++++ ++++  y+l+     +v+a +L+ gD+v F++ + 
  Pp3c3_23050V3.16.p 122 FDKVVSATDCRSTGHFVLPKRKVEEHfpPLSKPGGVWMTLIDDAGKEWSFEFCFWYSKESriYYLK-RFYPYVQATNLRGGDTVYFSRLE- 210
                         8899999*********************88999*******************99777776668888.8999****************765. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          e++l+++v+++
  Pp3c3_23050V3.16.p 211 PEGTLLMGVRKQ 222
                         888899999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-21116223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-19119220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-13120221No hitNo description
PfamPF023625.0E-10122222IPR003340B3 DNA binding domain
SMARTSM010192.4E-11122222IPR003340B3 DNA binding domain
PROSITE profilePS508639.939122223IPR003340B3 DNA binding domain
PROSITE profilePS5105013.655402452IPR011124Zinc finger, CW-type
PfamPF074961.1E-10407449IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MPAEKKVSIH VLRGAAKRSS SALATTASTC QIPGGTSLLV GCVLGKNLTV THQQAQSCLE  60
QRPSDEREDT ELLLGLEVLN GKGRTGVSTV PRSMSINSPS STNPNLLPIS GKFSAANTTF  120
LFDKVVSATD CRSTGHFVLP KRKVEEHFPP LSKPGGVWMT LIDDAGKEWS FEFCFWYSKE  180
SRIYYLKRFY PYVQATNLRG GDTVYFSRLE PEGTLLMGVR KQKLASPKHG RAIKPKNELE  240
AKVLSSRDLK VSSEEGKSLL DDGALLEDHP ATPSTDDASV DYDLCKSTDK KKMMRLTSPP  300
PISFDTQSVD HIATGEAVAT RKRRSITPES SEQINMKPGS QSSRGKRLGL TMEDYYEWED  360
IQDLFRAPPG AIATYTCVEG HEIEEYKEPP VLIKKTFYSA EIQEDDQWVQ CDDCGCWRRL  420
PADAFVHARW VCSDNEWDSR RARCNAPQEL SDHEMDRLLE GLSEADFAGS ETVSKLESYD  480
SDSGIPPFIP SEEEDSYCKQ PQTWNEAYGQ MQKKASQLVL NKKCKSVTSG KELSNGGEDL  540
LRSTDLINLS SRSPASMFGY ETPHPSTKAG KGHQMCTGCS KPIGSAAQGC KRCGTLTEYG  600
IRSRAQFSAG YRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A6e-26982301132B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324TRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372281.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372282.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372283.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372284.10.0B3 domain-containing protein Os07g0563300-like isoform X1
TrEMBLA9S4D90.0A9S4D9_PHYPA; Predicted protein
STRINGPP1S47_98V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.12e-47high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]