PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c21_17550V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 500aa MW: 56010.8 Da PI: 7.0679

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c21_17550V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.7	8.8e-30	221	305	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++ e+laLi++r++++ ++r++ k+plWe+vs+k++e g++rs k+Ckek+en++k+ykk k+g+ +r++++s +++f ql+a Pp3c21_17550V3.1.p 221 RWPRAETLALIQIRSDLDANFRDSGVKGPLWEDVSRKLAEMGYNRSGKKCKEKFENIHKYYKKSKDGRAGRQDGKS--YRFFAQLDA 305 8*******************************************************************866665..****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.841	214	278	IPR017877	Myb-like domain
SMART	SM00717	0.0045	218	280	IPR001005	SANT/Myb domain
Pfam	PF13837	4.8E-22	220	306	No hit	No description
CDD	cd12203	7.69E-31	220	285	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MQSTGQYGVS DSPQFLVARA PHIFSISHDS ISLSPPAGHA HQGHHPHQHH LPHHLQAPHH 60 LYGGHLSHQP HPSLQQIHQP QSSHASHAQH LQHAQHPQHS QHAPHSQHPA HPLPQLQQAQ 120 QQPASHASSS HQDVPQQQLQ QVQQQEEQHK QLVREQQQAQ EQQHAQEQMV QQLGLGDPDS 180 PDAPSPIASR PSPTNYSKLL LSAQQDDEGL EEERGNSGGN RWPRAETLAL IQIRSDLDAN 240 FRDSGVKGPL WEDVSRKLAE MGYNRSGKKC KEKFENIHKY YKKSKDGRAG RQDGKSYRFF 300 AQLDALFGGQ QTSTQVETDT AAAVLLIGNA PPLGISPTDQ DLNVSVQRAS EVSTGVTVSK 360 SSDDDYDGPG SGLRDNQDKK KNRKRKQIES VKFGTPKLDF FETLMKNMID KQEAMQMRFL 420 EMIEKMEQDR QAKEDAWRRQ EVARWQREHD LRAQENAIAA ARDSALISFL QKVTGQNIQL 480 SNFSTPLPTG IPPTRESEE*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MQSTGQYGVS DSPQFLVARA PHIFSISHDS ISLSPPAGHA HQGHHPHQHH LPHHLQAPHH  60
LYGGHLSHQP HPSLQQIHQP QSSHASHAQH LQHAQHPQHS QHAPHSQHPA HPLPQLQQAQ  120
QQPASHASSS HQDVPQQQLQ QVQQQEEQHK QLVREQQQAQ EQQHAQEQMV QQLGLGDPDS  180
PDAPSPIASR PSPTNYSKLL LSAQQDDEGL EEERGNSGGN RWPRAETLAL IQIRSDLDAN  240
FRDSGVKGPL WEDVSRKLAE MGYNRSGKKC KEKFENIHKY YKKSKDGRAG RQDGKSYRFF  300
AQLDALFGGQ QTSTQVETDT AAAVLLIGNA PPLGISPTDQ DLNVSVQRAS EVSTGVTVSK  360
SSDDDYDGPG SGLRDNQDKK KNRKRKQIES VKFGTPKLDF FETLMKNMID KQEAMQMRFL  420
EMIEKMEQDR QAKEDAWRRQ EVARWQREHD LRAQENAIAA ARDSALISFL QKVTGQNIQL  480
SNFSTPLPTG IPPTRESEE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	386	KKNRKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10177	0.0	gametophore

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359406.1	0.0	trihelix transcription factor GTL1-like
TrEMBL	A0A2K1ISD9	0.0	A0A2K1ISD9_PHYPA; Uncharacterized protein
STRING	PP1S85_150V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-46	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c21_17550V3.1.p