PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_6020V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 440aa    MW: 48643.4 Da    PI: 4.8511
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_6020V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.77.3e-27107171170
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                        r+++sL+llt+kf++l++++++g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwk
  Pp3c11_6020V3.2.p 107 RYDSSLGLLTKKFIELIKQADDGVLDLNKAADTL---NV--QKRRIYDITNVLEGIGLIEKKLKNRIRWK 171
                        6899******************************...**..****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-28103171IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-18107170IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.9E-33107172IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-24109171IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440741.44E-30188288No hitNo description
PfamPF164211.2E-32189287IPR032198E2F transcription factor, CC-MB domain
CDDcd146601.62E-46189288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MPNQQAPTWK AALCSGKPKI ESYEINNLLY ANMKRRNESE ERHGVQMNGW NGHSNSDHSH  60
APTPSGPRAR ASRSKTVKQT KNCPLTPGHS GIRSPTSSAP TPTSSCRYDS SLGLLTKKFI  120
ELIKQADDGV LDLNKAADTL NVQKRRIYDI TNVLEGIGLI EKKLKNRIRW KRLGMARNAD  180
IKDDGAGTQT EVEDLLNQES NLDESISEIR EQLKNLSEDD HNKQWLYVTE DDIKNLPCFQ  240
NETLIAIKAP LGTTLEVPDP DEAVEYPHRR FQILLRSNMG PIDVYLVSRF EGKFEEMNSA  300
EIPIEVEHPV PQAAGPPSPT DAMDQETMTM LPVVGYSLTD LEPPVSHEPA SQSSELISSH  360
PDLAGGIMRI APAEATTDTD YWLLSDAGVG ISDIWRSDPS NAMWDEVVRL NAEFGNENMG  420
SPRPHTPTSS NSMEVVPVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A5e-24102174275PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5473370.0AB547337.1 Physcomitrella patens E2F;1 mRNA for E2F transcription factor;1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389508.10.0transcription factor E2FB-like isoform X1
TrEMBLG1UDF70.0G1UDF7_PHYPA; E2F transcription factor1
STRINGPP1S364_42V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12251749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.27e-98E2F transcription factor 1