PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_21940V3.11.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 932aa    MW: 100602 Da    PI: 7.356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_21940V3.11.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.4e-16289387197
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpk +ae++   + ++e+  l+++d +gr W +++++  +++s++yvl+ G     ++ +L +gD+v+F++ +
  Pp3c11_21940V3.11.p 289 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLRIQDVTGRDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLHAGDTVTFSRLE 377
                          89**************************555556778***************9989999999***9.********************765 PP

                          SSEE..EEEEE CS
                   B3  87 rsefelvvkvf 97 
                            +++lv++ +
  Pp3c11_21940V3.11.p 378 -ADGKLVMGYR 387
                          .5666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.102.0E-41050IPR013088Zinc finger, NHR/GATA-type
Gene3DG3DSA:2.40.330.101.2E-26284389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-18286388IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-20287388No hitNo description
PROSITE profilePS5086310.687289390IPR003340B3 DNA binding domain
PfamPF023621.6E-13289388IPR003340B3 DNA binding domain
SMARTSM010191.4E-16289389IPR003340B3 DNA binding domain
PROSITE profilePS5105013.046523573IPR011124Zinc finger, CW-type
PfamPF074968.6E-10528570IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MAMDNKIECR KVCWNSKCGT SSSTTWRPGW IARNGRTAEL CDYCGLAYQQ SSFCETYHSD  60
DAGWRTCNFC KKRVHCGCVA SANGIVLLDK GGVECIRCAT AHDSAGSISL VGKHGQQLLS  120
PAVPLESGKV VDPAVRGWCE GYGAALAVCQ VDGGAWPPSS AARTSLSPPT GLARPWSTPE  180
TDISVKSKDG VDSASREQIT LEVMDCGGEG TESDKNVSLD RTKAGGAVGG GAAAGSSQSA  240
GQGSLRVARP PGEGRGRNQL LPRYWPRITD QELKQINSGD TQTTITPLFE KMLSASDAGR  300
IGRLVLPKAC AEAYFPPIHQ PEGLPLRIQD VTGRDWVFQF RFWPNNNSRM YVLEGVTPCI  360
QSMKLHAGDT VTFSRLEADG KLVMGYRKAP TSLSSQDAGA TRVGPNASNG LSNPSSAVIQ  420
TADGWASNVG APKSKESGVS IGQLWSSQMD RKRGRPLGSK SKRLRLDSID SMLLKSNWEE  480
AQELLRPAPS ASSTVITIDG HEFEEYSEPP VLAKRTFITK APSGAQEQWA QCDDCGTWRR  540
VPVDAFVPAR WSCSQNSWDQ TRAQCSAAQE VSSDKLEVLL GPGPTSEGGK QEYAPKVTPT  600
SREENVSTTS AAAGLDTLAQ AASTSLSPVR TTKHPRHRPG CTCIVCIQPP SGKGPKHKAS  660
CICNVCVTVK RRFRTLMQRR KKRQCEREFE AFRNKREWQE EDASEIADIG RAGTVDAAND  720
VDDDLPTPPV CSRDGVSEDG PVKGAIDLNI QPDHEERVSM VRLLQDAHLP LSAYLHQQRL  780
SSLYVGDLVS DHVSNDATSS HEDTLSESSS KAEADNELEV AGHVRHEAQR TQTSLGYVEQ  840
PNFVESWDAR GVKPSEFSGD SVHSSSSKFE FTMMNNVAAS SAKKHVTGAG RGRQICIGCG  900
EPIGSAAKER KNLDAELGQK YMFRCCLCLN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-612663892124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1669681KRRFRTLMQRRKK
2669682KRRFRTLMQRRKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.28750.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388645.10.0B3 domain-containing transcription repressor VAL1-like isoform X1
TrEMBLA0A2K1JVP00.0A0A2K1JVP0_PHYPA; Uncharacterized protein
STRINGPP1S31_242V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-157HSI2-like 1