PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016651891.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 328aa MW: 37518 Da PI: 8.403

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016651891.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.4	5.2e-27	201	250	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl XP_016651891.1 201 ANIALSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 250 79**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.327	185	270	IPR003035	RWP-RK domain
Pfam	PF02042	5.3E-22	202	250	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDSSDCEPHL LRSLLVFKNT INQELIRSLH VYRLDEGKEN EVEREFVLSA SEPYVELSAD 60 PLLRLMKFPV SQVHEGHVNG CWVCIFAFQG NCPPNFTCIP SILSVSRNRK LKSIPALAND 120 LQMIFELSNK KPLQRSGEET CQGSNDNNHQ LIRSSPVLDL DLNSLPCPVP MSESSEDQEI 180 GRSLPGIMEK KKKRAPSEHV ANIALSDLAK YFDLPIVEAS RNLNVGLTVL KKKCREFGIP 240 RWPHRKIKSL DGLIRDLQEE TEIQQQENQA AALAVAKRQR MLENEKESIE RKPFLEMKTE 300 TKKFRQDVFK RRHRARLLRS QGLPNSDN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016651891.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016651891.1	0.0	PREDICTED: protein RKD5
Swissprot	O81791	1e-91	RKD5_ARATH; Protein RKD5
TrEMBL	A0A251ND73	0.0	A0A251ND73_PRUPE; Uncharacterized protein
STRING	XP_008241948.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-82	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]