PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649171.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 440aa    MW: 47970.3 Da    PI: 5.7029
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649171.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.42.9e-084690439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........Htv 39
                      C++++ +++   C d +  lC++C ++ H++         H++
  XP_016649171.1 46 LLCDKCNAQPAMVRCMDEKLSLCQSCDQWNHNNgdtttgmggHRT 90
                    57*****************************88877777777665 PP
2CCT62.61.2e-21384427144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  XP_016649171.1 384 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 427
                     899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-4147IPR000315B-box-type zinc finger
CDDcd000210.00285347No hitNo description
PROSITE profilePS501198.6464393IPR000315B-box-type zinc finger
PROSITE profilePS5101714.684384426IPR010402CCT domain
PfamPF062031.3E-16384426IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEPLCEFCGV VRAVVYCKSD LARLCLHCDG CVHSANILSR RHPRSLLCDK CNAQPAMVRC  60
MDEKLSLCQS CDQWNHNNGD TTTGMGGHRT HALTCYTGCP SLSEFSRIWS SVLDGSSSSG  120
FETNGGGGGG GENNNWEQSL GSAQVPINDQ TNCIGNALER RDNSERSFGV VTSKLSGSLD  180
QSSCAKYEPW MARSTLISAN PNGIPQGNKD QAPFLPQESS LSKDSNDLCD GLNIDDVPLN  240
FENAEGIFSC PQGPSRYQFE DGEMDCLLME KNLSVTESNG PNDNAVQASS SGPQDCVAFQ  300
SSCGSDNVMP AMNGSANCLL MNPTCSRNIN LGFPTGQVHS SMSLSLSSMS RESNPDYQDC  360
GLSPIFLTGE PWDSAMEASS PQARDKAKMR YNEKKKTRTF GKQIRYASRK ARADTRKRVK  420
GRFVKAGEEY DYDPLVRRNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649171.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11 isoform X2
TrEMBLA0A251Q3W90.0A0A251Q3W9_PRUPE; Uncharacterized protein
STRINGEMJ179300.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.15e-81B-box type zinc finger protein with CCT domain