PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649170.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 451aa    MW: 49161.7 Da    PI: 5.7061
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649170.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.43e-084690439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........Htv 39
                      C++++ +++   C d +  lC++C ++ H++         H++
  XP_016649170.1 46 LLCDKCNAQPAMVRCMDEKLSLCQSCDQWNHNNgdtttgmggHRT 90
                    57*****************************88877777777665 PP
2CCT62.61.2e-21395438144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  XP_016649170.1 395 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 438
                     899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-4147IPR000315B-box-type zinc finger
CDDcd000210.00306347No hitNo description
PROSITE profilePS501198.6464393IPR000315B-box-type zinc finger
PROSITE profilePS5101714.684395437IPR010402CCT domain
PfamPF062031.4E-16395437IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEPLCEFCGV VRAVVYCKSD LARLCLHCDG CVHSANILSR RHPRSLLCDK CNAQPAMVRC  60
MDEKLSLCQS CDQWNHNNGD TTTGMGGHRT HALTCYTGCP SLSEFSRIWS SVLDGSSSSG  120
FETNGGGGGG GENNNWEQSL GSAQVPINDQ TNCIGNALER RDNSERSFGV VTSKLSGSLD  180
QSSCAKYEPW MARSTLISAN PNGIPQGNKD QAPFLPQESS LSKGCTNFKD LAIQDSNDLC  240
DGLNIDDVPL NFENAEGIFS CPQGPSRYQF EDGEMDCLLM EKNLSVTESN GPNDNAVQAS  300
SSGPQDCVAF QSSCGSDNVM PAMNGSANCL LMNPTCSRNI NLGFPTGQVH SSMSLSLSSM  360
SRESNPDYQD CGLSPIFLTG EPWDSAMEAS SPQARDKAKM RYNEKKKTRT FGKQIRYASR  420
KARADTRKRV KGRFVKAGEE YDYDPLVRRN F
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649170.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11 isoform X1
TrEMBLM5XFT80.0M5XFT8_PRUPE; Uncharacterized protein
STRINGEMJ179300.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.16e-69B-box type zinc finger protein with CCT domain