PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016648083.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 350aa MW: 39526.8 Da PI: 7.5584

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016648083.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.2	3.2e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk XP_016648083.1 9 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPTGK 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-29	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.941	1	53	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.56E-25	2	82	No hit	No description
SuperFamily	SSF55455	5.62E-25	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIVLLMFSP TGKPSLCSGK 60 RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLTNQ 120 SRLLQTQLSE IKKRLSCWSS PDKITSVEQL GQMEDSVRES LNQIRTHKEN LQKQQLMSLE 180 CTSQFQNGLH IPFSMNAEQQ LQPLSWIPTN ESRHMVLPED PNLLPHRDME CSASSSFGSY 240 SGYLGTGKSS EISTSGQENG ILNDLSRTAP LRLQLGGQFP YLPYNLNMLT DTKFQPPAEM 300 SPQENPVEYH VNGSFEAPRP EFYPTQHSWA STSGPCAVTM FDEHLYSQSN

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIVLLMFSP TGKPSLCSGK  60
RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLTNQ  120
SRLLQTQLSE IKKRLSCWSS PDKITSVEQL GQMEDSVRES LNQIRTHKEN LQKQQLMSLE  180
CTSQFQNGLH IPFSMNAEQQ LQPLSWIPTN ESRHMVLPED PNLLPHRDME CSASSSFGSY  240
SGYLGTGKSS EISTSGQENG ILNDLSRTAP LRLQLGGQFP YLPYNLNMLT DTKFQPPAEM  300
SPQENPVEYH VNGSFEAPRP EFYPTQHSWA STSGPCAVTM FDEHLYSQSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	3e-13	1	92	1	90	MEF2 CHIMERA
6byy_B	3e-13	1	92	1	90	MEF2 CHIMERA
6byy_C	3e-13	1	92	1	90	MEF2 CHIMERA
6byy_D	3e-13	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016648083.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648083.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
Swissprot	Q1PFA4	1e-122	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A314ZQJ3	0.0	A0A314ZQJ3_PRUYE; Agamous-like MADS-box protein AGL30 isoform X1
STRING	XP_008339884.1	0.0	(Malus domestica)
STRING	XP_008389454.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-110	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]