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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016646936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23390 Da PI: 9.005 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.6 | 5e-11 | 47 | 89 | 9 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50 r vtf kR++ ++ K E+ +LC++ ++ +++ s+ k+ ++ XP_016646936.1 47 RRVTFKKRKASLFRKLTEITTLCGIIACAVVYDpSDSKMDAWP 89 89**********************9998777751567888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-4 | 11 | 90 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-14 | 45 | 123 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.063 | 47 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-11 | 47 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.14E-19 | 47 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MLGRDAIGGL LGREAIDLGT VSSMSGNFYS YEIKMLGTFL YSRAHVRRVT FKKRKASLFR 60 KLTEITTLCG IIACAVVYDP SDSKMDAWPS PQEAFYVLEN FKKLPEQRRG QFMMDQKAFL 120 KKNISRLNGQ LERARFKYQA LDAELLLIEY LEGKNLRDSS RLGSLLALED QLAKKISFIT 180 NRIAFVEGLG PNEVDAEIIS DEMGDQG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016646936.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016646936.1 | 1e-151 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M5XZI5 | 1e-105 | M5XZI5_PRUPE; MADS-box protein 29 | ||||
STRING | XP_008219022.1 | 1e-120 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14464 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 2e-22 | AGAMOUS-like 87 |