PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243227.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 451aa    MW: 50255.6 Da    PI: 4.9384
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243227.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.41.6e-091660341
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                    +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v 
  XP_008243227.1 16 ARACDSCIRKRARWYCAADDAFLCQACDSSVHSAnqlarrHERVL 60
                    578*****************************6578888898875 PP
2CCT67.92.7e-23396439144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  XP_008243227.1 396 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 439
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.5E-121461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8791461IPR000315B-box-type zinc finger
PfamPF006439.0E-81660IPR000315B-box-type zinc finger
CDDcd000211.01E-91761No hitNo description
PfamPF062037.7E-18396438IPR010402CCT domain
PROSITE profilePS5101716.083396438IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSSNKKVANS LGAKTARACD SCIRKRARWY CAADDAFLCQ ACDSSVHSAN QLARRHERVL  60
LKTASSLKPT DKDDQVSVSD NPAAPSWHRG FRRKARTPRQ GKHKCQEGSR NRFPQVPEVG  120
ADDSNSYDEE NEEDQQQLLY RVPVFDPFVA EMCTATTSAN SNEEAVANYE LANTGDVSKV  180
SSSSPNYNHN GHDGFLLPSD MDLAEFAADV DSLLGKGLED DECFGMEGLG LMDSKENESN  240
CRVKLEDEEE EDEEGGTGGV NFMGCELGET PEIDMMREPF VLNFEDYDDS PQSCGEQDDK  300
LGVGMMDNTY SGDHQQHEEV HAGASKSSKK KEIFLRLDYE AVITAWDGSP WTSGGRPDFN  360
SECLPDCMGV CGTELHFPYG DLNGLWVHPA IADGGREARV SRYREKRRTR LFSKKIRYEV  420
RKLNAEKRPR MKGRFVKRAS FAGSAFPVLT K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406422RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243227.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like
TrEMBLM5XB520.0M5XB52_PRUPE; Uncharacterized protein
STRINGXP_008243227.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-84B-box type zinc finger protein with CCT domain