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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241195.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 188aa MW: 21363.6 Da PI: 9.7876 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.7 | 1.1e-11 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ien+s r+ f +R+ +lKK +E+S+LCd+ + i+++++ XP_008241195.1 11 IENDSARKKRFRRRKGSLLKKVSEISTLCDVGAFAIVYAPD 51 9*************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.5E-14 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.9 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.01E-15 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 5.49E-22 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-12 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MARTKVKLAW IENDSARKKR FRRRKGSLLK KVSEISTLCD VGAFAIVYAP DSDKPDVWPS 60 PSEVKELIAK FQSIPEAERS RKMMDHETYL KETIAKLEQQ LRKIKRQNYE MEMNDIMHDL 120 YKEEKMKGIS QIMERLEKDL PLADVSSQAG RDDENVVGRS SSNGAGRKIG GIRLMGFDIG 180 SSIIAGDN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241195.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241195.1 | 1e-136 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A251N955 | 1e-113 | A0A251N955_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241195.1 | 1e-136 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF39903 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28700.1 | 4e-31 | AGAMOUS-like 46 |