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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 26103.4 Da PI: 9.1972 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.3 | 4.1e-13 | 10 | 58 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50 ie++ r+ + kR+ +lKK +EL +LCd+ + vii++++ ++l ++ XP_008241194.1 10 IEDDKSRKACYRKRKICLLKKLNELTILCDVSAFVIIYGPEkDELVVWP 58 99*************************************7515677666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-8 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.063 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.95E-21 | 3 | 84 | No hit | No description |
SuperFamily | SSF55455 | 1.12E-19 | 3 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-14 | 10 | 53 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MNNKLKTAWI EDDKSRKACY RKRKICLLKK LNELTILCDV SAFVIIYGPE KDELVVWPSR 60 PVVQELLEKF LRMPLVDQCR KMLDQKAYLK ERAAKIQEQI RKAKKKNHEM KMKDILRKIQ 120 EGKPLSEFET SDLIDFILFL EEKMLEIQER VELLEQHVPQ GAGEKEKGKE IENNAVNIPR 180 NENITGGICS SNNMGENEKS GFRLMGVDIK VRHLIHEGNN GGTQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241194.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241194.1 | 1e-164 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2H4G6G7 | 1e-157 | A0A2H4G6G7_PRUPE; MADS-box protein 37 | ||||
STRING | XP_008241194.1 | 1e-163 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11014 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 5e-26 | AGAMOUS-like 48 |